Class: Namespace

Inherits:
ApplicationRecord show all
Includes:
Housekeeping::Timestamps, Housekeeping::Users, Shared::HasPapertrail, Shared::IsData, Shared::SharedAcrossProjects
Defined in:
app/models/namespace.rb

Overview

A Namespace is used to define a set of local Identifiers. All identifiers within a Namespace must be unique. Namespaces are shared across projects. In TaxonWorks Identifiers + Namespaces are used for differentiating/disambiguating one datum from another. This applies to all local identifiers, not just what most might be familiar with in the DwC catalogNumber field.

Namespaces are used to to meet practical needs that also have FAIR consequences:

  • They attempt to provide a degree of provenance as to how the Identifier came to be

  • To differentiate, in practical terms, one identifier from another within the system that merges data

  • To act as a labels (short mneomincs) that allows the data curator to disambiguate what might be otherwise two identical strings

Namespaces are minted in TW on a first come first serve basis. Their short and long names must be unique. When conflicts arise new values must be minted for record keeping purposes. In this case a verbatim_short_name can be provided, and this value will be presented for reporting/searching purposes. This is a strong restriction that is intended to encourage users to think before they mint a Namespace.

In TaxonWorks Namespaces _do not_ imply ownership of the things they are linked to. If an identifier has a Namespace that includes a reference, in some way, to some Repository, it does not mean that that Repository ‘owns’ the identified thing.

In natural history collection management many catalog numbers contain an institutional coden as part of their catalog number (as physically written). In TaxonWorks we treat that coden as the basis for a Namespace. Note that we also may use the CODEN in a second way, to identify the Repository. While the string is duplicate the meaning is not. One use let’s us quickly reference a Repository, the second use let’s us quickly narrow searches to a specific Identifier linked to our object.

from DwC in some contexts.

Returns:

  • (String) —

    The institution (loosely, could be a person) responsible for minting this Namespace. Roughly, where to look for more information. This is NOT 1:1 with rs.tdwg.org/dwc/terms/ownerInstitutionCode, which implies ownership. It is narrower in that it means the institution or individual “owns”, or minted this Namespace, that’s all.

  • (String) —

    The full, descriptive name of the namespace. For example ‘Illinois Natural History Collection Insect Collection Identifiers’.

  • (String) —

    A short, realized version of the name, as seen in the physical label if there is a physical form. For example “INHIC”. This may be embedded in rs.tdwg.org/dwc/terms/institutionCode. We presently do not differentiate a rs.tdwg.org/dwc/terms/collectionCode in identifiers, that data may(?) fall into Repositories.

  • (String) —

    TW enforces uniqueness of short names. When a short name exists for historical reasons but it has already been included in TW then a new short name must be minted, and a verbatim_short_name used to indicate the physically/and or historically recorded value.

  • (String, nil) —

    Defines the character(s) to be placed between the namespace short name and the identifier

  • (Boolean) —

    Defaults to false. If true then the namespace short name is not part of the “physical” identifier. Required to handle identifiers incoming

Instance Attribute Summary collapse

Attributes included from Housekeeping::Users

#by

Class Method Summary collapse

Instance Method Summary collapse

Methods included from Shared::IsData

#errors_excepting, #full_error_messages_excepting, #identical, #is_community?, #is_destroyable?, #is_editable?, #is_in_use?, #is_in_users_projects?, #metamorphosize, #similar

Methods included from Shared::HasPapertrail

#attribute_updated, #attribute_updater

Methods included from Housekeeping::Timestamps

#data_breakdown_for_chartkick_recent

Methods included from Housekeeping::Users

#set_created_by_id, #set_updated_by_id

Methods inherited from ApplicationRecord

transaction_with_retry

Instance Attribute Details

#delimiter ⇒ String, ...

A Namespace is used to define a set of local Identifiers. All identifiers within a Namespace must be unique. Namespaces are shared across projects. In TaxonWorks Identifiers + Namespaces are used for differentiating/disambiguating one datum from another. This applies to all local identifiers, not just what most might be familiar with in the DwC catalogNumber field.

Namespaces are used to to meet practical needs that also have FAIR consequences:

  • They attempt to provide a degree of provenance as to how the Identifier came to be

  • To differentiate, in practical terms, one identifier from another within the system that merges data

  • To act as a labels (short mneomincs) that allows the data curator to disambiguate what might be otherwise two identical strings

Namespaces are minted in TW on a first come first serve basis. Their short and long names must be unique. When conflicts arise new values must be minted for record keeping purposes. In this case a verbatim_short_name can be provided, and this value will be presented for reporting/searching purposes. This is a strong restriction that is intended to encourage users to think before they mint a Namespace.

In TaxonWorks Namespaces _do not_ imply ownership of the things they are linked to. If an identifier has a Namespace that includes a reference, in some way, to some Repository, it does not mean that that Repository ‘owns’ the identified thing.

In natural history collection management many catalog numbers contain an institutional coden as part of their catalog number (as physically written). In TaxonWorks we treat that coden as the basis for a Namespace. Note that we also may use the CODEN in a second way, to identify the Repository. While the string is duplicate the meaning is not. One use let’s us quickly reference a Repository, the second use let’s us quickly narrow searches to a specific Identifier linked to our object.

from DwC in some contexts.

Returns:

  • (String) —

    The institution (loosely, could be a person) responsible for minting this Namespace. Roughly, where to look for more information. This is NOT 1:1 with rs.tdwg.org/dwc/terms/ownerInstitutionCode, which implies ownership. It is narrower in that it means the institution or individual “owns”, or minted this Namespace, that’s all.

  • (String) —

    The full, descriptive name of the namespace. For example ‘Illinois Natural History Collection Insect Collection Identifiers’.

  • (String) —

    A short, realized version of the name, as seen in the physical label if there is a physical form. For example “INHIC”. This may be embedded in rs.tdwg.org/dwc/terms/institutionCode. We presently do not differentiate a rs.tdwg.org/dwc/terms/collectionCode in identifiers, that data may(?) fall into Repositories.

  • (String) —

    TW enforces uniqueness of short names. When a short name exists for historical reasons but it has already been included in TW then a new short name must be minted, and a verbatim_short_name used to indicate the physically/and or historically recorded value.

  • (String, nil) —

    Defines the character(s) to be placed between the namespace short name and the identifier

  • (Boolean) —

    Defaults to false. If true then the namespace short name is not part of the “physical” identifier. Required to handle identifiers incoming



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# File 'app/models/namespace.rb', line 60

class Namespace < ApplicationRecord
  include Housekeeping::Users
  include Housekeeping::Timestamps
  include Shared::SharedAcrossProjects
  include Shared::HasPapertrail
  include Shared::IsData

  after_update :update_local_idenfifiers

  validates_presence_of :name, :short_name
  validates_uniqueness_of :name, :short_name, case_sensitive: false

  # Autosave should resave all, but it clearly doesn't
  # we also don't want to validte the identifiers on this resave, but rather
  # just trigger the rebuild of identifiers#cache.  Will have to add an after_save here.
  has_many :identifiers, autosave: true, dependent: :restrict_with_error, inverse_of: :namespace

  scope :used_on_klass, -> (klass) { joins(:identifiers).where(identifiers: {identifier_object_type: klass} ) }
  scope :used_recently, -> { joins(:identifiers).includes(:identifiers).where(identifiers: { updated_at: 10.weeks.ago..Time.now } ).order('"identifiers"."created_at" DESC') }
  scope :used_in_project, -> (project_id) { joins(:identifiers).where( identifiers: { project_id: project_id } ) }

  def is_virtual?
    is_virtual
  end

  def self.select_optimized(user_id, project_id, klass)
    h = {
      recent: (
        Namespace.used_on_klass(klass)
        .where(identifiers: {updated_by_id: user_id})
        .used_in_project(project_id)
        .used_recently
        .distinct.limit(6).to_a +
      Namespace.where(created_by_id: user_id, created_at: (3.hours.ago..Time.now)).limit(5)).uniq,
      pinboard: Namespace.pinned_by(user_id).pinned_in_project(project_id).to_a
    }

    h[:quick] = (Namespace.pinned_by(user_id).pinboard_inserted.pinned_in_project(project_id).to_a  + h[:recent][0..3]).uniq
    h
  end

  def update_local_idenfifiers
    Identifier::Local.update_cached(self)
  end

end

#institution ⇒ String, ...

A Namespace is used to define a set of local Identifiers. All identifiers within a Namespace must be unique. Namespaces are shared across projects. In TaxonWorks Identifiers + Namespaces are used for differentiating/disambiguating one datum from another. This applies to all local identifiers, not just what most might be familiar with in the DwC catalogNumber field.

Namespaces are used to to meet practical needs that also have FAIR consequences:

  • They attempt to provide a degree of provenance as to how the Identifier came to be

  • To differentiate, in practical terms, one identifier from another within the system that merges data

  • To act as a labels (short mneomincs) that allows the data curator to disambiguate what might be otherwise two identical strings

Namespaces are minted in TW on a first come first serve basis. Their short and long names must be unique. When conflicts arise new values must be minted for record keeping purposes. In this case a verbatim_short_name can be provided, and this value will be presented for reporting/searching purposes. This is a strong restriction that is intended to encourage users to think before they mint a Namespace.

In TaxonWorks Namespaces _do not_ imply ownership of the things they are linked to. If an identifier has a Namespace that includes a reference, in some way, to some Repository, it does not mean that that Repository ‘owns’ the identified thing.

In natural history collection management many catalog numbers contain an institutional coden as part of their catalog number (as physically written). In TaxonWorks we treat that coden as the basis for a Namespace. Note that we also may use the CODEN in a second way, to identify the Repository. While the string is duplicate the meaning is not. One use let’s us quickly reference a Repository, the second use let’s us quickly narrow searches to a specific Identifier linked to our object.

from DwC in some contexts.

Returns:

  • (String) —

    The institution (loosely, could be a person) responsible for minting this Namespace. Roughly, where to look for more information. This is NOT 1:1 with rs.tdwg.org/dwc/terms/ownerInstitutionCode, which implies ownership. It is narrower in that it means the institution or individual “owns”, or minted this Namespace, that’s all.

  • (String) —

    The full, descriptive name of the namespace. For example ‘Illinois Natural History Collection Insect Collection Identifiers’.

  • (String) —

    A short, realized version of the name, as seen in the physical label if there is a physical form. For example “INHIC”. This may be embedded in rs.tdwg.org/dwc/terms/institutionCode. We presently do not differentiate a rs.tdwg.org/dwc/terms/collectionCode in identifiers, that data may(?) fall into Repositories.

  • (String) —

    TW enforces uniqueness of short names. When a short name exists for historical reasons but it has already been included in TW then a new short name must be minted, and a verbatim_short_name used to indicate the physically/and or historically recorded value.

  • (String, nil) —

    Defines the character(s) to be placed between the namespace short name and the identifier

  • (Boolean) —

    Defaults to false. If true then the namespace short name is not part of the “physical” identifier. Required to handle identifiers incoming



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# File 'app/models/namespace.rb', line 60

class Namespace < ApplicationRecord
  include Housekeeping::Users
  include Housekeeping::Timestamps
  include Shared::SharedAcrossProjects
  include Shared::HasPapertrail
  include Shared::IsData

  after_update :update_local_idenfifiers

  validates_presence_of :name, :short_name
  validates_uniqueness_of :name, :short_name, case_sensitive: false

  # Autosave should resave all, but it clearly doesn't
  # we also don't want to validte the identifiers on this resave, but rather
  # just trigger the rebuild of identifiers#cache.  Will have to add an after_save here.
  has_many :identifiers, autosave: true, dependent: :restrict_with_error, inverse_of: :namespace

  scope :used_on_klass, -> (klass) { joins(:identifiers).where(identifiers: {identifier_object_type: klass} ) }
  scope :used_recently, -> { joins(:identifiers).includes(:identifiers).where(identifiers: { updated_at: 10.weeks.ago..Time.now } ).order('"identifiers"."created_at" DESC') }
  scope :used_in_project, -> (project_id) { joins(:identifiers).where( identifiers: { project_id: project_id } ) }

  def is_virtual?
    is_virtual
  end

  def self.select_optimized(user_id, project_id, klass)
    h = {
      recent: (
        Namespace.used_on_klass(klass)
        .where(identifiers: {updated_by_id: user_id})
        .used_in_project(project_id)
        .used_recently
        .distinct.limit(6).to_a +
      Namespace.where(created_by_id: user_id, created_at: (3.hours.ago..Time.now)).limit(5)).uniq,
      pinboard: Namespace.pinned_by(user_id).pinned_in_project(project_id).to_a
    }

    h[:quick] = (Namespace.pinned_by(user_id).pinboard_inserted.pinned_in_project(project_id).to_a  + h[:recent][0..3]).uniq
    h
  end

  def update_local_idenfifiers
    Identifier::Local.update_cached(self)
  end

end

#is_virtual ⇒ String, ...

A Namespace is used to define a set of local Identifiers. All identifiers within a Namespace must be unique. Namespaces are shared across projects. In TaxonWorks Identifiers + Namespaces are used for differentiating/disambiguating one datum from another. This applies to all local identifiers, not just what most might be familiar with in the DwC catalogNumber field.

Namespaces are used to to meet practical needs that also have FAIR consequences:

  • They attempt to provide a degree of provenance as to how the Identifier came to be

  • To differentiate, in practical terms, one identifier from another within the system that merges data

  • To act as a labels (short mneomincs) that allows the data curator to disambiguate what might be otherwise two identical strings

Namespaces are minted in TW on a first come first serve basis. Their short and long names must be unique. When conflicts arise new values must be minted for record keeping purposes. In this case a verbatim_short_name can be provided, and this value will be presented for reporting/searching purposes. This is a strong restriction that is intended to encourage users to think before they mint a Namespace.

In TaxonWorks Namespaces _do not_ imply ownership of the things they are linked to. If an identifier has a Namespace that includes a reference, in some way, to some Repository, it does not mean that that Repository ‘owns’ the identified thing.

In natural history collection management many catalog numbers contain an institutional coden as part of their catalog number (as physically written). In TaxonWorks we treat that coden as the basis for a Namespace. Note that we also may use the CODEN in a second way, to identify the Repository. While the string is duplicate the meaning is not. One use let’s us quickly reference a Repository, the second use let’s us quickly narrow searches to a specific Identifier linked to our object.

from DwC in some contexts.

Returns:

  • (String) —

    The institution (loosely, could be a person) responsible for minting this Namespace. Roughly, where to look for more information. This is NOT 1:1 with rs.tdwg.org/dwc/terms/ownerInstitutionCode, which implies ownership. It is narrower in that it means the institution or individual “owns”, or minted this Namespace, that’s all.

  • (String) —

    The full, descriptive name of the namespace. For example ‘Illinois Natural History Collection Insect Collection Identifiers’.

  • (String) —

    A short, realized version of the name, as seen in the physical label if there is a physical form. For example “INHIC”. This may be embedded in rs.tdwg.org/dwc/terms/institutionCode. We presently do not differentiate a rs.tdwg.org/dwc/terms/collectionCode in identifiers, that data may(?) fall into Repositories.

  • (String) —

    TW enforces uniqueness of short names. When a short name exists for historical reasons but it has already been included in TW then a new short name must be minted, and a verbatim_short_name used to indicate the physically/and or historically recorded value.

  • (String, nil) —

    Defines the character(s) to be placed between the namespace short name and the identifier

  • (Boolean) —

    Defaults to false. If true then the namespace short name is not part of the “physical” identifier. Required to handle identifiers incoming



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# File 'app/models/namespace.rb', line 60

class Namespace < ApplicationRecord
  include Housekeeping::Users
  include Housekeeping::Timestamps
  include Shared::SharedAcrossProjects
  include Shared::HasPapertrail
  include Shared::IsData

  after_update :update_local_idenfifiers

  validates_presence_of :name, :short_name
  validates_uniqueness_of :name, :short_name, case_sensitive: false

  # Autosave should resave all, but it clearly doesn't
  # we also don't want to validte the identifiers on this resave, but rather
  # just trigger the rebuild of identifiers#cache.  Will have to add an after_save here.
  has_many :identifiers, autosave: true, dependent: :restrict_with_error, inverse_of: :namespace

  scope :used_on_klass, -> (klass) { joins(:identifiers).where(identifiers: {identifier_object_type: klass} ) }
  scope :used_recently, -> { joins(:identifiers).includes(:identifiers).where(identifiers: { updated_at: 10.weeks.ago..Time.now } ).order('"identifiers"."created_at" DESC') }
  scope :used_in_project, -> (project_id) { joins(:identifiers).where( identifiers: { project_id: project_id } ) }

  def is_virtual?
    is_virtual
  end

  def self.select_optimized(user_id, project_id, klass)
    h = {
      recent: (
        Namespace.used_on_klass(klass)
        .where(identifiers: {updated_by_id: user_id})
        .used_in_project(project_id)
        .used_recently
        .distinct.limit(6).to_a +
      Namespace.where(created_by_id: user_id, created_at: (3.hours.ago..Time.now)).limit(5)).uniq,
      pinboard: Namespace.pinned_by(user_id).pinned_in_project(project_id).to_a
    }

    h[:quick] = (Namespace.pinned_by(user_id).pinboard_inserted.pinned_in_project(project_id).to_a  + h[:recent][0..3]).uniq
    h
  end

  def update_local_idenfifiers
    Identifier::Local.update_cached(self)
  end

end

#name ⇒ String, ...

A Namespace is used to define a set of local Identifiers. All identifiers within a Namespace must be unique. Namespaces are shared across projects. In TaxonWorks Identifiers + Namespaces are used for differentiating/disambiguating one datum from another. This applies to all local identifiers, not just what most might be familiar with in the DwC catalogNumber field.

Namespaces are used to to meet practical needs that also have FAIR consequences:

  • They attempt to provide a degree of provenance as to how the Identifier came to be

  • To differentiate, in practical terms, one identifier from another within the system that merges data

  • To act as a labels (short mneomincs) that allows the data curator to disambiguate what might be otherwise two identical strings

Namespaces are minted in TW on a first come first serve basis. Their short and long names must be unique. When conflicts arise new values must be minted for record keeping purposes. In this case a verbatim_short_name can be provided, and this value will be presented for reporting/searching purposes. This is a strong restriction that is intended to encourage users to think before they mint a Namespace.

In TaxonWorks Namespaces _do not_ imply ownership of the things they are linked to. If an identifier has a Namespace that includes a reference, in some way, to some Repository, it does not mean that that Repository ‘owns’ the identified thing.

In natural history collection management many catalog numbers contain an institutional coden as part of their catalog number (as physically written). In TaxonWorks we treat that coden as the basis for a Namespace. Note that we also may use the CODEN in a second way, to identify the Repository. While the string is duplicate the meaning is not. One use let’s us quickly reference a Repository, the second use let’s us quickly narrow searches to a specific Identifier linked to our object.

from DwC in some contexts.

Returns:

  • (String) —

    The institution (loosely, could be a person) responsible for minting this Namespace. Roughly, where to look for more information. This is NOT 1:1 with rs.tdwg.org/dwc/terms/ownerInstitutionCode, which implies ownership. It is narrower in that it means the institution or individual “owns”, or minted this Namespace, that’s all.

  • (String) —

    The full, descriptive name of the namespace. For example ‘Illinois Natural History Collection Insect Collection Identifiers’.

  • (String) —

    A short, realized version of the name, as seen in the physical label if there is a physical form. For example “INHIC”. This may be embedded in rs.tdwg.org/dwc/terms/institutionCode. We presently do not differentiate a rs.tdwg.org/dwc/terms/collectionCode in identifiers, that data may(?) fall into Repositories.

  • (String) —

    TW enforces uniqueness of short names. When a short name exists for historical reasons but it has already been included in TW then a new short name must be minted, and a verbatim_short_name used to indicate the physically/and or historically recorded value.

  • (String, nil) —

    Defines the character(s) to be placed between the namespace short name and the identifier

  • (Boolean) —

    Defaults to false. If true then the namespace short name is not part of the “physical” identifier. Required to handle identifiers incoming



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# File 'app/models/namespace.rb', line 60

class Namespace < ApplicationRecord
  include Housekeeping::Users
  include Housekeeping::Timestamps
  include Shared::SharedAcrossProjects
  include Shared::HasPapertrail
  include Shared::IsData

  after_update :update_local_idenfifiers

  validates_presence_of :name, :short_name
  validates_uniqueness_of :name, :short_name, case_sensitive: false

  # Autosave should resave all, but it clearly doesn't
  # we also don't want to validte the identifiers on this resave, but rather
  # just trigger the rebuild of identifiers#cache.  Will have to add an after_save here.
  has_many :identifiers, autosave: true, dependent: :restrict_with_error, inverse_of: :namespace

  scope :used_on_klass, -> (klass) { joins(:identifiers).where(identifiers: {identifier_object_type: klass} ) }
  scope :used_recently, -> { joins(:identifiers).includes(:identifiers).where(identifiers: { updated_at: 10.weeks.ago..Time.now } ).order('"identifiers"."created_at" DESC') }
  scope :used_in_project, -> (project_id) { joins(:identifiers).where( identifiers: { project_id: project_id } ) }

  def is_virtual?
    is_virtual
  end

  def self.select_optimized(user_id, project_id, klass)
    h = {
      recent: (
        Namespace.used_on_klass(klass)
        .where(identifiers: {updated_by_id: user_id})
        .used_in_project(project_id)
        .used_recently
        .distinct.limit(6).to_a +
      Namespace.where(created_by_id: user_id, created_at: (3.hours.ago..Time.now)).limit(5)).uniq,
      pinboard: Namespace.pinned_by(user_id).pinned_in_project(project_id).to_a
    }

    h[:quick] = (Namespace.pinned_by(user_id).pinboard_inserted.pinned_in_project(project_id).to_a  + h[:recent][0..3]).uniq
    h
  end

  def update_local_idenfifiers
    Identifier::Local.update_cached(self)
  end

end

#short_name ⇒ String, ...

A Namespace is used to define a set of local Identifiers. All identifiers within a Namespace must be unique. Namespaces are shared across projects. In TaxonWorks Identifiers + Namespaces are used for differentiating/disambiguating one datum from another. This applies to all local identifiers, not just what most might be familiar with in the DwC catalogNumber field.

Namespaces are used to to meet practical needs that also have FAIR consequences:

  • They attempt to provide a degree of provenance as to how the Identifier came to be

  • To differentiate, in practical terms, one identifier from another within the system that merges data

  • To act as a labels (short mneomincs) that allows the data curator to disambiguate what might be otherwise two identical strings

Namespaces are minted in TW on a first come first serve basis. Their short and long names must be unique. When conflicts arise new values must be minted for record keeping purposes. In this case a verbatim_short_name can be provided, and this value will be presented for reporting/searching purposes. This is a strong restriction that is intended to encourage users to think before they mint a Namespace.

In TaxonWorks Namespaces _do not_ imply ownership of the things they are linked to. If an identifier has a Namespace that includes a reference, in some way, to some Repository, it does not mean that that Repository ‘owns’ the identified thing.

In natural history collection management many catalog numbers contain an institutional coden as part of their catalog number (as physically written). In TaxonWorks we treat that coden as the basis for a Namespace. Note that we also may use the CODEN in a second way, to identify the Repository. While the string is duplicate the meaning is not. One use let’s us quickly reference a Repository, the second use let’s us quickly narrow searches to a specific Identifier linked to our object.

from DwC in some contexts.

Returns:

  • (String) —

    The institution (loosely, could be a person) responsible for minting this Namespace. Roughly, where to look for more information. This is NOT 1:1 with rs.tdwg.org/dwc/terms/ownerInstitutionCode, which implies ownership. It is narrower in that it means the institution or individual “owns”, or minted this Namespace, that’s all.

  • (String) —

    The full, descriptive name of the namespace. For example ‘Illinois Natural History Collection Insect Collection Identifiers’.

  • (String) —

    A short, realized version of the name, as seen in the physical label if there is a physical form. For example “INHIC”. This may be embedded in rs.tdwg.org/dwc/terms/institutionCode. We presently do not differentiate a rs.tdwg.org/dwc/terms/collectionCode in identifiers, that data may(?) fall into Repositories.

  • (String) —

    TW enforces uniqueness of short names. When a short name exists for historical reasons but it has already been included in TW then a new short name must be minted, and a verbatim_short_name used to indicate the physically/and or historically recorded value.

  • (String, nil) —

    Defines the character(s) to be placed between the namespace short name and the identifier

  • (Boolean) —

    Defaults to false. If true then the namespace short name is not part of the “physical” identifier. Required to handle identifiers incoming



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# File 'app/models/namespace.rb', line 60

class Namespace < ApplicationRecord
  include Housekeeping::Users
  include Housekeeping::Timestamps
  include Shared::SharedAcrossProjects
  include Shared::HasPapertrail
  include Shared::IsData

  after_update :update_local_idenfifiers

  validates_presence_of :name, :short_name
  validates_uniqueness_of :name, :short_name, case_sensitive: false

  # Autosave should resave all, but it clearly doesn't
  # we also don't want to validte the identifiers on this resave, but rather
  # just trigger the rebuild of identifiers#cache.  Will have to add an after_save here.
  has_many :identifiers, autosave: true, dependent: :restrict_with_error, inverse_of: :namespace

  scope :used_on_klass, -> (klass) { joins(:identifiers).where(identifiers: {identifier_object_type: klass} ) }
  scope :used_recently, -> { joins(:identifiers).includes(:identifiers).where(identifiers: { updated_at: 10.weeks.ago..Time.now } ).order('"identifiers"."created_at" DESC') }
  scope :used_in_project, -> (project_id) { joins(:identifiers).where( identifiers: { project_id: project_id } ) }

  def is_virtual?
    is_virtual
  end

  def self.select_optimized(user_id, project_id, klass)
    h = {
      recent: (
        Namespace.used_on_klass(klass)
        .where(identifiers: {updated_by_id: user_id})
        .used_in_project(project_id)
        .used_recently
        .distinct.limit(6).to_a +
      Namespace.where(created_by_id: user_id, created_at: (3.hours.ago..Time.now)).limit(5)).uniq,
      pinboard: Namespace.pinned_by(user_id).pinned_in_project(project_id).to_a
    }

    h[:quick] = (Namespace.pinned_by(user_id).pinboard_inserted.pinned_in_project(project_id).to_a  + h[:recent][0..3]).uniq
    h
  end

  def update_local_idenfifiers
    Identifier::Local.update_cached(self)
  end

end

#verbatim_short_name ⇒ String, ...

A Namespace is used to define a set of local Identifiers. All identifiers within a Namespace must be unique. Namespaces are shared across projects. In TaxonWorks Identifiers + Namespaces are used for differentiating/disambiguating one datum from another. This applies to all local identifiers, not just what most might be familiar with in the DwC catalogNumber field.

Namespaces are used to to meet practical needs that also have FAIR consequences:

  • They attempt to provide a degree of provenance as to how the Identifier came to be

  • To differentiate, in practical terms, one identifier from another within the system that merges data

  • To act as a labels (short mneomincs) that allows the data curator to disambiguate what might be otherwise two identical strings

Namespaces are minted in TW on a first come first serve basis. Their short and long names must be unique. When conflicts arise new values must be minted for record keeping purposes. In this case a verbatim_short_name can be provided, and this value will be presented for reporting/searching purposes. This is a strong restriction that is intended to encourage users to think before they mint a Namespace.

In TaxonWorks Namespaces _do not_ imply ownership of the things they are linked to. If an identifier has a Namespace that includes a reference, in some way, to some Repository, it does not mean that that Repository ‘owns’ the identified thing.

In natural history collection management many catalog numbers contain an institutional coden as part of their catalog number (as physically written). In TaxonWorks we treat that coden as the basis for a Namespace. Note that we also may use the CODEN in a second way, to identify the Repository. While the string is duplicate the meaning is not. One use let’s us quickly reference a Repository, the second use let’s us quickly narrow searches to a specific Identifier linked to our object.

from DwC in some contexts.

Returns:

  • (String) —

    The institution (loosely, could be a person) responsible for minting this Namespace. Roughly, where to look for more information. This is NOT 1:1 with rs.tdwg.org/dwc/terms/ownerInstitutionCode, which implies ownership. It is narrower in that it means the institution or individual “owns”, or minted this Namespace, that’s all.

  • (String) —

    The full, descriptive name of the namespace. For example ‘Illinois Natural History Collection Insect Collection Identifiers’.

  • (String) —

    A short, realized version of the name, as seen in the physical label if there is a physical form. For example “INHIC”. This may be embedded in rs.tdwg.org/dwc/terms/institutionCode. We presently do not differentiate a rs.tdwg.org/dwc/terms/collectionCode in identifiers, that data may(?) fall into Repositories.

  • (String) —

    TW enforces uniqueness of short names. When a short name exists for historical reasons but it has already been included in TW then a new short name must be minted, and a verbatim_short_name used to indicate the physically/and or historically recorded value.

  • (String, nil) —

    Defines the character(s) to be placed between the namespace short name and the identifier

  • (Boolean) —

    Defaults to false. If true then the namespace short name is not part of the “physical” identifier. Required to handle identifiers incoming



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# File 'app/models/namespace.rb', line 60

class Namespace < ApplicationRecord
  include Housekeeping::Users
  include Housekeeping::Timestamps
  include Shared::SharedAcrossProjects
  include Shared::HasPapertrail
  include Shared::IsData

  after_update :update_local_idenfifiers

  validates_presence_of :name, :short_name
  validates_uniqueness_of :name, :short_name, case_sensitive: false

  # Autosave should resave all, but it clearly doesn't
  # we also don't want to validte the identifiers on this resave, but rather
  # just trigger the rebuild of identifiers#cache.  Will have to add an after_save here.
  has_many :identifiers, autosave: true, dependent: :restrict_with_error, inverse_of: :namespace

  scope :used_on_klass, -> (klass) { joins(:identifiers).where(identifiers: {identifier_object_type: klass} ) }
  scope :used_recently, -> { joins(:identifiers).includes(:identifiers).where(identifiers: { updated_at: 10.weeks.ago..Time.now } ).order('"identifiers"."created_at" DESC') }
  scope :used_in_project, -> (project_id) { joins(:identifiers).where( identifiers: { project_id: project_id } ) }

  def is_virtual?
    is_virtual
  end

  def self.select_optimized(user_id, project_id, klass)
    h = {
      recent: (
        Namespace.used_on_klass(klass)
        .where(identifiers: {updated_by_id: user_id})
        .used_in_project(project_id)
        .used_recently
        .distinct.limit(6).to_a +
      Namespace.where(created_by_id: user_id, created_at: (3.hours.ago..Time.now)).limit(5)).uniq,
      pinboard: Namespace.pinned_by(user_id).pinned_in_project(project_id).to_a
    }

    h[:quick] = (Namespace.pinned_by(user_id).pinboard_inserted.pinned_in_project(project_id).to_a  + h[:recent][0..3]).uniq
    h
  end

  def update_local_idenfifiers
    Identifier::Local.update_cached(self)
  end

end

Class Method Details

.select_optimized(user_id, project_id, klass) ⇒ Object 



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# File 'app/models/namespace.rb', line 85

def self.select_optimized(user_id, project_id, klass)
  h = {
    recent: (
      Namespace.used_on_klass(klass)
      .where(identifiers: {updated_by_id: user_id})
      .used_in_project(project_id)
      .used_recently
      .distinct.limit(6).to_a +
    Namespace.where(created_by_id: user_id, created_at: (3.hours.ago..Time.now)).limit(5)).uniq,
    pinboard: Namespace.pinned_by(user_id).pinned_in_project(project_id).to_a
  }

  h[:quick] = (Namespace.pinned_by(user_id).pinboard_inserted.pinned_in_project(project_id).to_a  + h[:recent][0..3]).uniq
  h
end

Instance Method Details

#is_virtual? ⇒ Boolean

Returns:

  • (Boolean) 


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# File 'app/models/namespace.rb', line 81

def is_virtual?
  is_virtual
end

#update_local_idenfifiers ⇒ Object 



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# File 'app/models/namespace.rb', line 101

def update_local_idenfifiers
  Identifier::Local.update_cached(self)
end