Class: TaxonNameRelationship::Iczn::Invalidating::Synonym
Defined Under Namespace
Classes: ForgottenName, Objective, Subjective, Suppression
Constant Summary
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- NOMEN_URI =
'http://purl.obolibrary.org/obo/NOMEN_0000276'.freeze
SoftValidation::ANCESTORS_WITH_SOFT_VALIDATIONS
Instance Attribute Summary
#no_cached, #object_taxon_name_id, #project_id, #subject_taxon_name_id, #type
Class Method Summary
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Instance Method Summary
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assignable, disjoint_subject_classes, gbif_status_of_subject, nomenclatural_priority, #similar_homonym_string, #subject_properties
disjoint_subject_classes, #sv_validate_priority, valid_object_ranks, valid_subject_ranks
assignable, collect_descendants_and_itself_to_s, collect_descendants_to_s, collect_to_s, disjoint_subject_classes, gbif_status_of_object, gbif_status_of_subject, #is_combination?, #is_invalidating?, nomen_uri, nomenclatural_priority, #nomenclature_date, #object_properties, #object_status_tag, parent, required_taxon_name_relationships, #set_cached_names_for_taxon_names, #subject_invalid_statuses, #subject_properties, #subject_status_tag, #sv_coordinated_taxa, #sv_coordinated_taxa_object, #sv_fix_combination_relationship, #sv_fix_coordinated_object_taxa, #sv_fix_coordinated_subject_taxa, #sv_fix_subject_parent_update, #sv_objective_synonym_relationship, #sv_specific_relationship, #sv_synonym_linked_to_valid_name, #sv_validate_disjoint_object, #sv_validate_disjoint_relationships, #sv_validate_disjoint_subject, #sv_validate_priority, #sv_validate_required_relationships, #type_class, #type_class=, #type_name, valid_object_ranks, valid_subject_ranks, #validate_object_and_subject_both_protonyms, #validate_object_must_equal_subject_for_uncertain_placement, #validate_rank_group, #validate_subject_and_object_are_not_identical, #validate_subject_and_object_ranks, #validate_subject_and_object_share_code, #validate_type, #validate_uniqueness_of_typification_object
#clear_soft_validations, #fix_soft_validations, #soft_fixed?, #soft_valid?, #soft_validate, #soft_validated?, #soft_validations
#has_polymorphic_relationship?
transaction_with_retry
Class Method Details
.assignment_method ⇒ Object
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# File 'app/models/taxon_name_relationship/iczn/invalidating/synonym.rb', line 32
def self.assignment_method
:iczn_set_as_synonym_of
end
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.disjoint_object_classes ⇒ Object
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# File 'app/models/taxon_name_relationship/iczn/invalidating/synonym.rb', line 11
def self.disjoint_object_classes
self.parent.disjoint_object_classes +
self.collect_descendants_and_itself_to_s(TaxonNameClassification::Iczn::Available::Invalid)
end
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.disjoint_taxon_name_relationships ⇒ Object
.inverse_assignment_method ⇒ Object
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# File 'app/models/taxon_name_relationship/iczn/invalidating/synonym.rb', line 38
def self.inverse_assignment_method
:iczn_synonym
end
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Instance Method Details
#object_status ⇒ Object
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# File 'app/models/taxon_name_relationship/iczn/invalidating/synonym.rb', line 16
def object_status
'senior synonym'
end
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#object_status_connector_to_subject ⇒ Object
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# File 'app/models/taxon_name_relationship/iczn/invalidating/synonym.rb', line 28
def object_status_connector_to_subject
' of'
end
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#subject_status ⇒ Object
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# File 'app/models/taxon_name_relationship/iczn/invalidating/synonym.rb', line 20
def subject_status
'synonym'
end
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#subject_status_connector_to_object ⇒ Object
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# File 'app/models/taxon_name_relationship/iczn/invalidating/synonym.rb', line 24
def subject_status_connector_to_object
' of'
end
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#sv_fix_specify_synonymy_type ⇒ Object
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# File 'app/models/taxon_name_relationship/iczn/invalidating/synonym.rb', line 60
def sv_fix_specify_synonymy_type
s = self.subject_taxon_name
o = self.object_taxon_name
subject_type = s.type_taxon_name
object_type = o.type_taxon_name
new_relationship_name = self.type_name
if (subject_type == object_type && !subject_type.nil? ) || (!s.get_primary_type.empty? && s.has_same_primary_type(o) )
new_relationship_name = 'TaxonNameRelationship::Iczn::Invalidating::Synonym::Objective'
elsif (subject_type != object_type && !subject_type.nil? ) || (!s.get_primary_type.empty? && !o.get_primary_type.empty? && !s.has_same_primary_type(o))
new_relationship_name = 'TaxonNameRelationship::Iczn::Invalidating::Synonym::Subjective'
end
if self.type_name != new_relationship_name
self.type = new_relationship_name
begin
TaxonNameRelationship.transaction do
self.save
return true
end
rescue
end
end
false
end
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#sv_not_specific_relationship ⇒ Object
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# File 'app/models/taxon_name_relationship/iczn/invalidating/synonym.rb', line 55
def sv_not_specific_relationship
soft_validations.add(:type, 'Please specify if this is a objective or subjective synonym',
fix: :sv_fix_specify_synonymy_type, success_message: 'Synonym updated to being objective or subjective')
end
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#sv_synonym_relationship ⇒ Object
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# File 'app/models/taxon_name_relationship/iczn/invalidating/synonym.rb', line 43
def sv_synonym_relationship
if self.source
date1 = self.source.cached_nomenclature_date.to_time
date2 = self.subject_taxon_name.nomenclature_date
if !!date1 && !!date2
soft_validations.add(:base, "#{self.subject_taxon_name.cached_html_name_and_author_year} was not described at the time of citation (#{date1}") if date2 > date1
end
else
soft_validations.add(:base, 'The original publication is not selected')
end
end
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