Class: BiocurationClassification

Inherits:
ApplicationRecord show all
Includes:
Housekeeping, Shared::IsData
Defined in:
app/models/biocuration_classification.rb

Overview

A BiocurationClassification classifies a CollectionObject within a collection into some biologically-related category. See BiocurationClass.

Instance Attribute Summary collapse

Instance Method Summary collapse

Methods included from Shared::IsData

#errors_excepting, #full_error_messages_excepting, #identical, #is_community?, #is_destroyable?, #is_editable?, #is_in_use?, #is_in_users_projects?, #metamorphosize, #similar

Methods included from Housekeeping

#has_polymorphic_relationship?

Methods inherited from ApplicationRecord

transaction_with_retry

Instance Attribute Details

#biocuration_class_id ⇒ Integer

the biocuration class ID

Returns:

  • (Integer) 


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# File 'app/models/biocuration_classification.rb', line 24

class BiocurationClassification < ApplicationRecord
  include Housekeeping
  include Shared::IsData

  acts_as_list scope: [:biocuration_classification_object_id, :biocuration_classification_object_type, :project_id]

  belongs_to :biocuration_class, inverse_of: :biocuration_classifications
  belongs_to :biocuration_classification_object, polymorphic: true, inverse_of: :biocuration_classifications

  validates_presence_of :biocuration_class, :biocuration_classification_object
  validates_uniqueness_of :biocuration_class, scope: [:biocuration_classification_object]

  # Janky, but here for now
  after_save :update_dwc_occurrence
  after_destroy :revert_dwc_occurrence

  protected

  def update_dwc_occurrence
    if biocuration_class.uri == DWC_FOSSIL_URI
      biocuration_classification_object.dwc_occurrence&.update_attribute(:basisOfRecord, 'FossilSpecimen')
    end
  end

  def revert_dwc_occurrence
    if biocuration_class.uri == DWC_FOSSIL_URI
      biocuration_classification_object.dwc_occurrence&.update_attribute(:basisOfRecord, 'PreservedSpecimen')
    end
  end

end

#biocuration_classification_object_id ⇒ Integer

id of the object the classification is for

Returns:

  • (Integer) 


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# File 'app/models/biocuration_classification.rb', line 24

class BiocurationClassification < ApplicationRecord
  include Housekeeping
  include Shared::IsData

  acts_as_list scope: [:biocuration_classification_object_id, :biocuration_classification_object_type, :project_id]

  belongs_to :biocuration_class, inverse_of: :biocuration_classifications
  belongs_to :biocuration_classification_object, polymorphic: true, inverse_of: :biocuration_classifications

  validates_presence_of :biocuration_class, :biocuration_classification_object
  validates_uniqueness_of :biocuration_class, scope: [:biocuration_classification_object]

  # Janky, but here for now
  after_save :update_dwc_occurrence
  after_destroy :revert_dwc_occurrence

  protected

  def update_dwc_occurrence
    if biocuration_class.uri == DWC_FOSSIL_URI
      biocuration_classification_object.dwc_occurrence&.update_attribute(:basisOfRecord, 'FossilSpecimen')
    end
  end

  def revert_dwc_occurrence
    if biocuration_class.uri == DWC_FOSSIL_URI
      biocuration_classification_object.dwc_occurrence&.update_attribute(:basisOfRecord, 'PreservedSpecimen')
    end
  end

end

#biocuration_classification_object_type ⇒ String

Returns baseclass model name the classficiation is for.

Returns:

  • (String) —

    baseclass model name the classficiation is for



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# File 'app/models/biocuration_classification.rb', line 24

class BiocurationClassification < ApplicationRecord
  include Housekeeping
  include Shared::IsData

  acts_as_list scope: [:biocuration_classification_object_id, :biocuration_classification_object_type, :project_id]

  belongs_to :biocuration_class, inverse_of: :biocuration_classifications
  belongs_to :biocuration_classification_object, polymorphic: true, inverse_of: :biocuration_classifications

  validates_presence_of :biocuration_class, :biocuration_classification_object
  validates_uniqueness_of :biocuration_class, scope: [:biocuration_classification_object]

  # Janky, but here for now
  after_save :update_dwc_occurrence
  after_destroy :revert_dwc_occurrence

  protected

  def update_dwc_occurrence
    if biocuration_class.uri == DWC_FOSSIL_URI
      biocuration_classification_object.dwc_occurrence&.update_attribute(:basisOfRecord, 'FossilSpecimen')
    end
  end

  def revert_dwc_occurrence
    if biocuration_class.uri == DWC_FOSSIL_URI
      biocuration_classification_object.dwc_occurrence&.update_attribute(:basisOfRecord, 'PreservedSpecimen')
    end
  end

end

#position ⇒ Integer

Returns used with acts_as_list.

Returns:

  • (Integer) —

    used with acts_as_list



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# File 'app/models/biocuration_classification.rb', line 24

class BiocurationClassification < ApplicationRecord
  include Housekeeping
  include Shared::IsData

  acts_as_list scope: [:biocuration_classification_object_id, :biocuration_classification_object_type, :project_id]

  belongs_to :biocuration_class, inverse_of: :biocuration_classifications
  belongs_to :biocuration_classification_object, polymorphic: true, inverse_of: :biocuration_classifications

  validates_presence_of :biocuration_class, :biocuration_classification_object
  validates_uniqueness_of :biocuration_class, scope: [:biocuration_classification_object]

  # Janky, but here for now
  after_save :update_dwc_occurrence
  after_destroy :revert_dwc_occurrence

  protected

  def update_dwc_occurrence
    if biocuration_class.uri == DWC_FOSSIL_URI
      biocuration_classification_object.dwc_occurrence&.update_attribute(:basisOfRecord, 'FossilSpecimen')
    end
  end

  def revert_dwc_occurrence
    if biocuration_class.uri == DWC_FOSSIL_URI
      biocuration_classification_object.dwc_occurrence&.update_attribute(:basisOfRecord, 'PreservedSpecimen')
    end
  end

end

#project_id ⇒ Integer

the project ID

Returns:

  • (Integer) 


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# File 'app/models/biocuration_classification.rb', line 24

class BiocurationClassification < ApplicationRecord
  include Housekeeping
  include Shared::IsData

  acts_as_list scope: [:biocuration_classification_object_id, :biocuration_classification_object_type, :project_id]

  belongs_to :biocuration_class, inverse_of: :biocuration_classifications
  belongs_to :biocuration_classification_object, polymorphic: true, inverse_of: :biocuration_classifications

  validates_presence_of :biocuration_class, :biocuration_classification_object
  validates_uniqueness_of :biocuration_class, scope: [:biocuration_classification_object]

  # Janky, but here for now
  after_save :update_dwc_occurrence
  after_destroy :revert_dwc_occurrence

  protected

  def update_dwc_occurrence
    if biocuration_class.uri == DWC_FOSSIL_URI
      biocuration_classification_object.dwc_occurrence&.update_attribute(:basisOfRecord, 'FossilSpecimen')
    end
  end

  def revert_dwc_occurrence
    if biocuration_class.uri == DWC_FOSSIL_URI
      biocuration_classification_object.dwc_occurrence&.update_attribute(:basisOfRecord, 'PreservedSpecimen')
    end
  end

end

Instance Method Details

#revert_dwc_occurrence ⇒ Object (protected) 



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# File 'app/models/biocuration_classification.rb', line 48

def revert_dwc_occurrence
  if biocuration_class.uri == DWC_FOSSIL_URI
    biocuration_classification_object.dwc_occurrence&.update_attribute(:basisOfRecord, 'PreservedSpecimen')
  end
end

#update_dwc_occurrence ⇒ Object (protected) 



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# File 'app/models/biocuration_classification.rb', line 42

def update_dwc_occurrence
  if biocuration_class.uri == DWC_FOSSIL_URI
    biocuration_classification_object.dwc_occurrence&.update_attribute(:basisOfRecord, 'FossilSpecimen')
  end
end