Module: BiologicalAssociation::DwcExtensions
- Extended by:
- ActiveSupport::Concern
- Included in:
- BiologicalAssociation
- Defined in:
- app/models/biological_association/dwc_extensions.rb
Instance Method Summary collapse
- #darwin_core_extension_json(inverted = false) ⇒ Object
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      #darwin_core_extension_row(inverted: false)  ⇒ Object 
    
    
  
  
  
  
  
  
  
  
  
    Don’t use dwc_ !! inverted means subject and object have already been switched, but relationship must use ‘inverted_name` instead of `name`. 
- #dwc_related_resource(inverted = false) ⇒ Object
- #dwc_related_resource_id(inverted = false) ⇒ Object
- 
  
    
      #dwc_relationship_according_to(inverted = false)  ⇒ Object 
    
    
  
  
  
  
  
  
  
  
  
    TODO: Should reference DOIs, Identifiers, or identifiers in lieu of short citations. 
- #dwc_relationship_established_date(inverted = false) ⇒ Object
- #dwc_relationship_of_resource(inverted = false) ⇒ Object
- #dwc_relationship_of_resource_id(inverted = false) ⇒ Object
- 
  
    
      #dwc_relationship_remarks(inverted = false)  ⇒ Object 
    
    
  
  
  
  
  
  
  
  
  
    TODO: Generic helper. 
- #dwc_resource(inverted = false) ⇒ Object
- #dwc_resource_id(inverted = false) ⇒ Object
- #dwc_resource_relationship_coreid(inverted = false) ⇒ Object
- #dwc_resource_relationship_id(inverted = false) ⇒ Object
- 
  
    
      #globi_extension_json  ⇒ Object 
    
    
  
  
  
  
  
  
  
  
  
    Don’t use dwc_. 
Instance Method Details
#darwin_core_extension_json(inverted = false) ⇒ Object
| 46 47 48 | # File 'app/models/biological_association/dwc_extensions.rb', line 46 def darwin_core_extension_json(inverted = false) end | 
#darwin_core_extension_row(inverted: false) ⇒ Object
Don’t use dwc_ !! inverted means subject and object have already been switched, but relationship must use ‘inverted_name` instead of `name`.
| 25 26 27 | # File 'app/models/biological_association/dwc_extensions.rb', line 25 def darwin_core_extension_row(inverted: false) Export::CSV::Dwc::Extension::BiologicalAssociations::HEADERS.collect{|h| send(DWC_EXTENSION_MAP[h.to_sym], inverted)} end | 
#dwc_related_resource(inverted = false) ⇒ Object
| 96 97 98 99 100 101 102 103 | # File 'app/models/biological_association/dwc_extensions.rb', line 96 def (inverted = false) case biological_association_object.class.base_class.name when 'Otu' ApplicationController.helpers.label_for_otu(biological_association_object) when 'CollectionObject' ApplicationController.helpers.label_for_collection_object(biological_association_object) end end | 
#dwc_related_resource_id(inverted = false) ⇒ Object
| 87 88 89 90 91 92 93 94 | # File 'app/models/biological_association/dwc_extensions.rb', line 87 def (inverted = false) case biological_association_object.class.base_class.name when 'Otu' biological_association_object.uuid || biological_association_object.uri || biological_association_object.id when 'CollectionObject' biological_association_object.dwc_occurrence_id end end | 
#dwc_relationship_according_to(inverted = false) ⇒ Object
TODO: Should reference DOIs, Identifiers, or identifiers in lieu of short citations
| 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 | # File 'app/models/biological_association/dwc_extensions.rb', line 106 def dwc_relationship_according_to(inverted = false) ApplicationController.helpers.short_sources_tag(sources) # Could be collectors (ORCID or ...) # Could be citation providers t = [biological_association_subject_type , biological_association_object_type] case t when %w{Otu Otu} # Published or nothing ApplicationController.helpers.short_sources_tag(sources) when %w{CollectionObject Otu} # Assume exists on label biological_association_subject.dwc_recorded_by || ApplicationController.helpers.short_sources_tag(sources) when %w{Otu CollectionObject} # Assume exists on label biological_association_object.dwc_recorded_by || ApplicationController.helpers.short_sources_tag(sources) when %w{CollectionObject CollectionObject} # Lots of assumptions behind this. What if specimens were marked as collected in 2 different events, that would be odd # but perhaps not impossible biological_association_subject.dwc_recorded_by || biological_association_object.dwc_recorded_by else 'BAD DATA: TYPE ERROR' end end | 
#dwc_relationship_established_date(inverted = false) ⇒ Object
| 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 | # File 'app/models/biological_association/dwc_extensions.rb', line 130 def dwc_relationship_established_date(inverted = false) t = [biological_association_subject_type , biological_association_object_type] case t when %w{Otu Otu} ApplicationController.helpers.short_sources_year_tag(sources) when %w{CollectionObject Otu} biological_association_subject.dwc_event_date || ApplicationController.helpers.short_sources_year_tag(sources) when %w{Otu CollectionObject} biological_association_object.dwc_event_date || ApplicationController.helpers.short_sources_year_tag(sources) when %w{CollectionObject CollectionObject} # Lots of assumptions behind this. What if specimens were marked as collected in 2 different events, that would be odd # but perhaps not impossible biological_association_subject.dwc_event_date || biological_association_object.dwc_event_date else 'BAD DATA: TYPE ERROR' end end | 
#dwc_relationship_of_resource(inverted = false) ⇒ Object
| 79 80 81 82 83 84 85 | # File 'app/models/biological_association/dwc_extensions.rb', line 79 def dwc_relationship_of_resource(inverted = false) if inverted biological_relationship.inverted_name else biological_relationship.name end end | 
#dwc_relationship_of_resource_id(inverted = false) ⇒ Object
| 72 73 74 75 76 77 | # File 'app/models/biological_association/dwc_extensions.rb', line 72 def dwc_relationship_of_resource_id(inverted = false) s = biological_relationship.uris.first&.cached || biological_relationship_id # TODO: this might mess up uri handling inverted ? "#{s} inverted" : s end | 
#dwc_relationship_remarks(inverted = false) ⇒ Object
TODO: Generic helper
| 150 151 152 | # File 'app/models/biological_association/dwc_extensions.rb', line 150 def dwc_relationship_remarks(inverted = false) Utilities::Strings.sanitize_for_csv( notes.collect{|n| n.text}.join(' | ')).presence end | 
#dwc_resource(inverted = false) ⇒ Object
| 63 64 65 66 67 68 69 70 | # File 'app/models/biological_association/dwc_extensions.rb', line 63 def dwc_resource(inverted = false) case biological_association_subject.class.base_class.name when 'Otu' ApplicationController.helpers.label_for_otu(biological_association_subject) when 'CollectionObject' ApplicationController.helpers.label_for_collection_object(biological_association_subject) end end | 
#dwc_resource_id(inverted = false) ⇒ Object
| 54 55 56 57 58 59 60 61 | # File 'app/models/biological_association/dwc_extensions.rb', line 54 def dwc_resource_id(inverted = false) case biological_association_subject.class.base_class.name when 'Otu' biological_association_subject.uuid || biological_association_subject.uri || biological_association_subject.id when 'CollectionObject' biological_association_subject.dwc_occurrence_id end end | 
#dwc_resource_relationship_coreid(inverted = false) ⇒ Object
| 40 41 42 43 44 | # File 'app/models/biological_association/dwc_extensions.rb', line 40 def dwc_resource_relationship_coreid(inverted = false) # Note that this could be subject or object of the original association (see # note above on `inverted`), which is what we want. dwc_resource_id(inverted) end | 
#dwc_resource_relationship_id(inverted = false) ⇒ Object
| 50 51 52 | # File 'app/models/biological_association/dwc_extensions.rb', line 50 def dwc_resource_relationship_id(inverted = false) uuid || id end | 
#globi_extension_json ⇒ Object
Don’t use dwc_
| 30 31 32 33 34 35 36 37 38 | # File 'app/models/biological_association/dwc_extensions.rb', line 30 def globi_extension_json r = {} Export::CSV::Dwc::Extension::BiologicalAssociations::HEADERS.each do |h| if m = DWC_EXTENSION_MAP[h.to_sym] r[h] = send(m, false) end end r end |