Module: BiologicalAssociationsHelper

Defined in:
app/helpers/biological_associations_helper.rb

Instance Method Summary collapse

Instance Method Details



9
10
11
12
13
14
15
 
# File 'app/helpers/biological_associations_helper.rb', line 9

def biological_association_link(biological_association)
  return nil if biological_association.nil?
  link_to(object_tag(biological_association.biological_association_subject).html_safe, biological_association.biological_association_subject.metamorphosize) + ' ' +
    link_to(content_tag(:span, biological_relationship_tag(biological_association.biological_relationship), class: :notice).html_safe, biological_association) + ' ' +
    link_to(object_tag(biological_association.biological_association_object).html_safe, biological_association.biological_association_object.metamorphosize)
  #link_to(biological_association_tag(biological_association).html_safe, biological_association)
end

#biological_association_tag(biological_association) ⇒ Object 



3
4
5
6
7
 
# File 'app/helpers/biological_associations_helper.rb', line 3

def biological_association_tag(biological_association)
  return nil if biological_association.nil?
  object_tag(biological_association.biological_association_subject) + ' ' + content_tag(:span, biological_relationship_tag(biological_association.biological_relationship), class: :notice) + ' ' +
    object_tag(biological_association.biological_association_object)
end

#family_by_genus_summary(scope) ⇒ Object 



17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
 
# File 'app/helpers/biological_associations_helper.rb', line 17

def family_by_genus_summary(scope)
  r = { }

  scope.find_each do |o|
    i = o.biological_association_subject.taxonomy

    j = o.biological_association_object.taxonomy

    gk = i['kingdom'] || 'unknown'
    g = i['genus']&.compact&.join(' ') || 'unknown'

    fk = j['kingdom'] || 'unknown'
    f = j['family'] || 'unknown'

    r[gk] ||= {}
    r[gk][g] ||= {}
    r[gk][g][fk] ||= {}
    r[gk][g][fk][f] ||= 0
    r[gk][g][fk][f] += 1
  end

  r
end