Class: Catalog::Nomenclature::Entry

Inherits:
Entry
  • Object
show all
Defined in:
lib/catalog/nomenclature/entry.rb

Instance Attribute Summary collapse

Attributes inherited from Entry

#dates, #item_index, #items, #object, #sort_order, #sources, #topics

Instance Method Summary collapse

Methods inherited from Entry

#all_dates, #all_topics, #citations, #coordinate_entry_items, #date_range, #first_item?, #index_items, #is_subsequent_entry_item?, #items_by_object, #last_item?, #original_citation_present?, #to_json, #topics_for_source, #year_hash

Constructor Details

#initialize(taxon_name) ⇒ Entry

Returns a new instance of Entry.



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# File 'lib/catalog/nomenclature/entry.rb', line 17

def initialize(taxon_name)
  super(taxon_name)
  true
end

Instance Attribute Details

#all_protonyms ⇒ Array (protected)

Returns:

  • (Array) 


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# File 'lib/catalog/nomenclature/entry.rb', line 250

def all_protonyms
  @all_protonyms
end

#citations_with_names ⇒ Hash

Returns this is a very object heavy summary.

Returns:

  • (Hash) —

    this is a very object heavy summary



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# File 'lib/catalog/nomenclature/entry.rb', line 125

def citations_with_names
  @citations_with_names
end

#relationship_items ⇒ Array of EntryItems (protected)

Returns only those entry items that reference a TaxonNameRelationship.

Returns:

  • (Array of EntryItems) —

    only those entry items that reference a TaxonNameRelationship



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# File 'lib/catalog/nomenclature/entry.rb', line 256

def relationship_items
  @relationship_items
end

Instance Method Details

#all_citations ⇒ Array of Citations (protected)

Returns:

  • (Array of Citations) 


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# File 'lib/catalog/nomenclature/entry.rb', line 225

def all_citations
  c  = items.collect{|i| i.citation}

  if !object.nil?
    relationship_items.each do |i|
      c << i.object.object_taxon_name.origin_citation if i.object.subject_taxon_name != object  # base_object?
      c << i.object.subject_taxon_name.origin_citation if i.object.object_taxon_name != object
    end
  end

  # TODO: Why aren't these first-class EntryItems? I think they should be.
  # This is here because they are cross-referenced (referenced inline) in (HTML) rendering
  c += ::TaxonNameClassification.where(taxon_name_id: all_protonyms.collect{|p| p.object}).all.
    collect{|tnc| tnc.citations}

  c += TaxonNameRelationship::Typification.where(object_taxon_name_id: all_protonyms.collect{|p| p.object}).all.
    collect{|tr| tr.citations}

  c += TypeMaterial.where(protonym_id: all_protonyms.collect{|p| p.object}).all.
    collect{|tm| tm.citations}

  c.flatten.compact.uniq.sort_by{|s| s.source.cached}
end

#all_names ⇒ Array of TaxonName (protected)

Returns a summary of all names referenced in this entry.

Returns:

  • (Array of TaxonName) —

    a summary of all names referenced in this entry



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# File 'lib/catalog/nomenclature/entry.rb', line 190

def all_names
  n = [ object ]
  items.each do |i|
    n.push item_names(i)
  end
  n = n.flatten.uniq.sort_by!(&:cached)
  n
end

#all_sources ⇒ Array of Sources (protected)

Returns as extracted for all EntryItems, ordered alphabetically by full citation.

Returns:

  • (Array of Sources) —

    as extracted for all EntryItems, ordered alphabetically by full citation



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# File 'lib/catalog/nomenclature/entry.rb', line 201

def all_sources
  s  = items.collect{|i| i.source}
  if !object.nil?
    relationship_items.each do |i|
      s << i.object.object_taxon_name.origin_citation.try(:source) if i.object.subject_taxon_name != object  # base_object?
      s << i.object.subject_taxon_name.origin_citation.try(:source) if i.object.object_taxon_name != object
    end
  end

  # TODO: Why aren't these first-class EntryItems?  I think they should be.
  # This is here because they are cross-referenced in HTML rendering
  s += ::TaxonNameClassification.where(taxon_name_id: all_protonyms.collect{|p| p.object}).all.
    collect{|tnc| tnc.citations.collect{|c| c.source}}.flatten

  s += TaxonNameRelationship::Typification.where(object_taxon_name_id: all_protonyms.collect{|p| p.object}).all.
    collect{|tnc| tnc.citations.collect{|c| c.source}}.flatten

  s += TypeMaterial.where(protonym_id: all_protonyms.collect{|p| p.object}).all.
    collect{|tnc| tnc.citations.collect{|c| c.source}}.flatten

  s.compact.uniq.sort_by{|s| s.cached}
end

#build ⇒ Object 



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# File 'lib/catalog/nomenclature/entry.rb', line 22

def build
  v = object.valid_taxon_name
  base_names = v.historical_taxon_names

  base_names.each do |t|

    matches_target = entry_item_matches_target?(t, object)

    if !t.citations.load.any?
      items << Catalog::Nomenclature::EntryItem.new(
        object: t,
        base_object: t,
        citation: nil,
        nomenclature_date: t.cached_nomenclature_date,
        year_suffix: nil,
        pages: nil,
        current_target: matches_target)
    end

    t.citations.each do |c|
      items << Catalog::Nomenclature::EntryItem.new(
        object: t,
        base_object: t,
        citation: c,
        nomenclature_date: c.source.cached_nomenclature_date,
        year_suffix: c.source.year_suffix,
        pages: c.source.pages,
        current_target: matches_target)
    end

    ::TaxonNameRelationship.where_subject_is_taxon_name(t).with_type_array(STATUS_TAXON_NAME_RELATIONSHIP_NAMES + TAXON_NAME_RELATIONSHIP_NAMES_CLASSIFICATION).each do |r|

      matches_target = entry_item_matches_target?(r.subject_taxon_name, object)

      if !r.citations.load.any?
        items << Catalog::Nomenclature::EntryItem.new(
          object: r,
          base_object: r.subject_taxon_name,
          citation: nil,
          nomenclature_date: r.subject_taxon_name.cached_nomenclature_date,
          year_suffix: nil,
          pages: nil,
          current_target: matches_target
        )
      end

      r.citations.each do |c|
        items << Catalog::Nomenclature::EntryItem.new(
          object: r,
          base_object: r.subject_taxon_name,
          citation: c,
          nomenclature_date: (c.try(:source).try(:cached_nomenclature_date) || r.subject_taxon_name.cached_nomenclature_date),
          year_suffix: (c.try(:source).try(:year_suffix) || nil),
          pages: (c.try(:source).try(:pages) || nil),
          current_target: matches_target
        )
      end
    end
  end

  true
end

#entry_item_matches_target?(item_object, reference_object) ⇒ Boolean

Returns this is the MM result. Only return true when the protonym that is the focus of the Entry is referenced in the EntryItem.

Returns:

  • (Boolean) —

    this is the MM result. Only return true when the protonym that is the focus of the Entry is referenced in the EntryItem



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# File 'lib/catalog/nomenclature/entry.rb', line 89

def entry_item_matches_target?(item_object, reference_object)
  case item_object.class.to_s
  when 'Protonym'
    return item_object.id == reference_object.id
  when 'Combination'
    item_object.combination_taxon_names.each do |p|
      return true if p.id == reference_object.id
    end
    return false
  else
    if object_class =~ /^TaxonNameRelationship/
      # Technically we only want misspellings here?
      return true if item_object.subject_taxon_name.id == reference_object.id
    end
    return false
  end
end

#item_names(catalog_item) ⇒ Array (protected)

Parameters:

  • catalog_item (CatalogEntry)

Returns:

  • (Array) 


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# File 'lib/catalog/nomenclature/entry.rb', line 183

def item_names(catalog_item)
  [object, catalog_item.base_object, catalog_item.other_name].compact.uniq
end

#names ⇒ Array

Returns:

  • (Array) 


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# File 'lib/catalog/nomenclature/entry.rb', line 118

def names
  @names ||= all_names
  @names
end

#ordered_by_nomenclature_date ⇒ Array of NomenclatureCatalog::EntryItem

item.base_object (Protonym or Combination) item.object (Protonym, Combination, Relationship)

Returns:



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# File 'lib/catalog/nomenclature/entry.rb', line 111

def ordered_by_nomenclature_date
  now = Time.now
  #items.sort{|a,b| [(a.nomenclature_date&.to_time || now), a.year_suffix.to_s + 'z', a.pages.to_s + 'z', a.object_class, a.base_object.cached_original_combination.to_s ] <=> [(b.nomenclature_date&.to_time || now), b.year_suffix.to_s + 'z', b.pages.to_s + 'z', b.object_class, b.base_object.cached_original_combination.to_s ] }
  items.sort_by{|a| [(a.nomenclature_date&.to_time || now), a.base_object.cached_is_valid.to_s.gsub('true', '1'), a.object_class.to_s.gsub('Combination', 'z'), a.year_suffix.to_s + 'z', a.pages.to_s + 'z', a.base_object.cached_original_combination.to_s ] }
end