Module: Export::Coldp::Files::NameRelation

Defined in:
lib/export/coldp/files/name_relation.rb

Overview

nameID relatedNameID type referenceID remarks

Constant Summary collapse

BLOCKED =

These concepts do not really fit with the CoL Name/NameRelation data model or are represented in a different way TODO: SupressedSynony misspelled in TW models, which probably should be SupressedSynonym

%w[TaxonNameRelationship::CurrentCombination
TaxonNameRelationship::Combination
TaxonNameRelationship::Combination::Family
TaxonNameRelationship::Combination::Genus
TaxonNameRelationship::Combination::Subgenus
TaxonNameRelationship::Combination::Species
TaxonNameRelationship::Combination::Subspecies
TaxonNameRelationship::Combination::Variety
TaxonNameRelationship::Combination::Subvariety
TaxonNameRelationship::Combination::Series
TaxonNameRelationship::Combination::Subseries
TaxonNameRelationship::Combination::Section
TaxonNameRelationship::Combination::Subsection
TaxonNameRelationship::Combination::Form
TaxonNameRelationship::Combination::Subform
TaxonNameRelationship::OriginalCombination
TaxonNameRelationship::OriginalCombination::Original
TaxonNameRelationship::OriginalCombination::OriginalGenus
TaxonNameRelationship::OriginalCombination::OriginalSubgenus
TaxonNameRelationship::OriginalCombination::OriginalSpecies
TaxonNameRelationship::OriginalCombination::OriginalSubspecies
TaxonNameRelationship::OriginalCombination::OriginalVariety
TaxonNameRelationship::OriginalCombination::OriginalSubvariety
TaxonNameRelationship::OriginalCombination::OriginalForm
TaxonNameRelationship::OriginalCombination::OriginalSubform
TaxonNameRelationship::SourceClassifiedAs
TaxonNameRelationship::Iczn::Invalidating
TaxonNameRelationship::Iczn::Invalidating::Suppression::Total
TaxonNameRelationship::Iczn::Invalidating::Misapplication
TaxonNameRelationship::Iczn::Invalidating::Synonym
TaxonNameRelationship::Iczn::Invalidating::Synonym::Subjective
TaxonNameRelationship::Iczn::Invalidating::Usage
TaxonNameRelationship::Iczn::PotentiallyValidating
TaxonNameRelationship::Iczn::Validating
TaxonNameRelationship::Iczn::Validating::UncertainPlacement
TaxonNameRelationship::Icnp::Accepting
TaxonNameRelationship::Icnp::Unaccepting
TaxonNameRelationship::Icnp::Unaccepting::Synonym
TaxonNameRelationship::Icnp::Unaccepting::SupressedSynonym
TaxonNameRelationship::Icnp::Unaccepting::Usage
TaxonNameRelationship::Icn::Accepting
TaxonNameRelationship::Icn::Unaccepting
TaxonNameRelationship::Icn::Unaccepting::Synonym
TaxonNameRelationship::Icn::Unaccepting::Synonym::Heterotypic
TaxonNameRelationship::Icn::Unaccepting::Usage
TaxonNameRelationship::Icvcn::Accepting
TaxonNameRelationship::Icvcn::Accepting::UncertainPlacement
TaxonNameRelationship::Icvcn::Unaccepting
TaxonNameRelationship::Hybrid].freeze

Class Method Summary collapse

Class Method Details

.generate(otus, project_members, reference_csv = nil) ⇒ Object 



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# File 'lib/export/coldp/files/name_relation.rb', line 73

def self.generate(otus, project_members, reference_csv = nil )
  ::CSV.generate(col_sep: "\t") do |csv|

    csv << %w{
      nameID
      relatedNameID
      type
      referenceID
      modified
      modifiedBy
      remarks
    }

    otus.each do |o|
      o.taxon_name.taxon_name_relationships.each do |tnr|

        # Combinations and OriginalCombinations are already handled in the Name module
        unless BLOCKED.include? tnr.type

          sources = tnr.sources.load
          reference_ids = sources.collect{|a| a.id}
          reference_id = reference_ids.first

          csv << [
            tnr.subject_taxon_name_id,                                       # nameID
            tnr.object_taxon_name_id,                                        # relatedNameID
            type(tnr),                                                       # type
            reference_id,                                                    # referenceID
            Export::Coldp.modified(tnr[:updated_at]),                         # modified
            Export::Coldp.modified_by(tnr[:updated_by_id], project_members), # modified_by
            nil,                                                             # remarks
          ]

          Export::Coldp::Files::Reference.add_reference_rows(sources, reference_csv, project_members) if reference_csv
        end
      end
    end
  end
end

.type(tnr) ⇒ Object 



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# File 'lib/export/coldp/files/name_relation.rb', line 63

def self.type(tnr)
  if tnr.type.include? "TaxonNameRelationship::Typification"  # There are no nomen_uri's for Typification
    type = "type"
  else
    type = tnr.type.constantize.nomen_uri
  end
  type
end