Module: Export::Coldp::Files::TaxonConceptRelation

Defined in:
lib/export/coldp/files/taxon_concept_relation.rb

Overview

taxonID relatedTaxonID sourceID type referenceID remarks modified modifiedBy

Constant Summary collapse

MAP_TYPES = 
{
    "OtuRelationship::Intersecting" => "intersecting",  # TODO: not included in CLB? http://api.checklistbank.org/vocab/TaxonConceptRelType
    "OtuRelationship::Disjoint" => "excludes",
    "OtuRelationship::Equal" => "equals",
    "OtuRelationship::ProperPartInverse" => "includes",
    "OtuRelationship::ProperPart" => "included in",
    "OtuRelationship::PartiallyOverlapping" => "overlaps",
}

Class Method Summary collapse

Class Method Details

.generate(otus, project_members, reference_csv = nil) ⇒ Object 



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# File 'lib/export/coldp/files/taxon_concept_relation.rb', line 26

def self.generate(otus, project_members, reference_csv = nil )
    ::CSV.generate(col_sep: "\t") do |csv|

        csv << %w{
            taxonID
            relatedTaxonID
            sourceID
            type
            referenceID
            remarks
            modified
            modifiedBy
        } 

        otus.each do |o|
            o.otu_relationships.each do |orel|

                sources = orel.sources.load
                reference_ids = sources.collect{|a| a.id}
                reference_id = reference_ids.first

                csv << [
                    orel.subject_otu_id,                                             # taxonID
                    orel.object_otu_id,                                              # relatedTaxonID
                    nil,                                                             # sourceID
                    type(orel),                                                      # type
                    reference_id,                                                    # referenceID
                    nil,                                                             # remarks
                    Export::Coldp.modified(orel[:updated_at]),                       # modified
                    Export::Coldp.modified_by(orel[:updated_by_id], project_members) # modified_by
                ]

                Export::Coldp::Files::Reference.add_reference_rows(sources, reference_csv, project_members) if reference_csv
            end
        end
    end
end

.type(orel) ⇒ Object 



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# File 'lib/export/coldp/files/taxon_concept_relation.rb', line 21

def self.type(orel)
  MAP_TYPES[orel.type]
end