Module: Export::Coldp::Files::TypeMaterial

Defined in:
lib/export/coldp/files/type_material.rb

Overview

ID nameID citation status referenceID locality country latitude longitude altitude host date collector institutionCode catalogNumber associatedSequences sex link remarks

Class Method Summary collapse

Class Method Details

.date(co) ⇒ Object 



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# File 'lib/export/coldp/files/type_material.rb', line 27

def self.date(co)
  co.dwc_event_date&.split('/')[0] unless co.dwc_event_date.nil?
end

.generate(otus, project_members, reference_csv = nil) ⇒ Object 



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# File 'lib/export/coldp/files/type_material.rb', line 31

def self.generate(otus, project_members, reference_csv = nil )
  ::CSV.generate(col_sep: "\t") do |csv|

    csv << %w{
      ID
      nameID
      citation
      status
      referenceID
      locality
      country
      latitude
      longitude
      altitude
      host
      date
      collector
      institutionCode
      catalogNumber
      associatedSequences
      sex
      link
      modified
      modifiedBy
      remarks
    }

    TypeMaterial.joins(:otus).where(otus: otus).eager_load(:collection_object).find_each do |tm|

      co = tm.collection_object
      sources = tm.sources.load
      reference_ids = sources.collect{|a| a.id}
      reference_id = reference_ids.first

      csv << [
        nil,                                                            # ID: don't expose TW internal type material ID
        tm.protonym_id,                                                 # nameID
        co.buffered_collecting_event,                                   # citation
        tm.type_type,                                                   # status
        reference_id,                                                   # referenceID
        locality(co),                                                   # locality
        co.collecting_event&.cached_level0_geographic_name,             # country
        co.dwc_decimal_latitude,                                        # latitude
        co.dwc_decimal_longitude,                                       # longitude
        co.dwc_verbatim_elevation,                                      # altitude
        nil,                                                            # host
        date(co),                                                       # date
        co.dwc_recorded_by,                                             # collector
        co.dwc_institution_code,                                        # institutionCode
        co.dwc_catalog_number,                                          # catalogNumber
        nil,                                                            # associatedSequences: unclear what is wanted? https://github.com/CatalogueOfLife/coldp#associatedsequences
        nil,                                                            # sex
        nil,                                                            # link
        Export::Coldp.modified(tm[:updated_at]),                        # modified
        Export::Coldp.modified_by(tm[:updated_by_id], project_members), # modifiedBy
        nil                                                             # remarks
      ]

        Export::Coldp::Files::Reference.add_reference_rows(sources, reference_csv, project_members) if reference_csv
    end
  end
end

.locality(co) ⇒ Object 



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# File 'lib/export/coldp/files/type_material.rb', line 23

def self.locality(co)
  [co.dwc_country, co.dwc_state_province, co.dwc_county, co.dwc_locality].compact.join(', ')
end