Class: ExtractsController

Inherits:
ApplicationController show all
Includes:
DataControllerConfiguration::ProjectDataControllerConfiguration
Defined in:
app/controllers/extracts_controller.rb

Instance Method Summary collapse

Methods included from DataControllerConfiguration::ProjectDataControllerConfiguration

#annotator_params

Methods included from RedirectHelper

#destroy_redirect

Methods included from RequestType

#json_request?

Methods included from LogRecent

#log_user_recent_route

Methods included from Cookies

#digest_cookie, #digested_cookie_exists?

Methods included from Whitelist

#whitelist_constantize

Methods included from ProjectsHelper

#invalid_object, #project_link, #project_matches, #project_tag, #projects_list, #projects_search_form

Methods included from Api::Intercept

#intercept_api

Methods included from TokenAuthentication

#intercept_project, #intercept_user, #intercept_user_or_project, #project_token_authenticate, #token_authenticate

Instance Method Details

#autocomplete ⇒ Object 



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# File 'app/controllers/extracts_controller.rb', line 81

def autocomplete
  @extracts = ::Queries::Extract::Autocomplete.new(
    params[:term],
    project_id: sessions_current_project_id
  ).autocomplete
end

#create ⇒ Object

POST /extracts POST /extracts.json



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# File 'app/controllers/extracts_controller.rb', line 43

def create
  @extract = Extract.new(extract_params)

  respond_to do |format|
    if @extract.save
      format.html { redirect_to @extract, notice: 'Extract was successfully created.' }
      format.json { render :show, status: :created, location: @extract }
    else
      format.html { render :new }
      format.json { render json: @extract.errors, status: :unprocessable_entity }
    end
  end
end

#destroy ⇒ Object

DELETE /extracts/1 DELETE /extracts/1.json



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# File 'app/controllers/extracts_controller.rb', line 73

def destroy
  @extract.destroy
  respond_to do |format|
    format.html { redirect_to extracts_url, notice: 'Extract was successfully destroyed.' }
    format.json { head :no_content }
  end
end

#edit ⇒ Object

GET /extracts/1/edit



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# File 'app/controllers/extracts_controller.rb', line 34

def edit
end

#extract_params ⇒ Object (private)

Never trust parameters from the scary internet, only allow the white list through.



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# File 'app/controllers/extracts_controller.rb', line 140

def extract_params
  params.require(:extract).permit(
    :repository_id,
    :verbatim_anatomical_origin,
    :year_made,
    :month_made,
    :day_made,

    roles_attributes: [
      :id,
      :_destroy,
      :type,
      :person_id,
      :position,
      person_attributes: [
        :last_name,
        :first_name,
        :suffix, :prefix
      ]
    ],

    identifiers_attributes: [
      :id,
      :namespace_id,
      :identifier,
      :type,
      :_destroy
    ],

    data_attributes_attributes: [
      :id,
      :_destroy,
      :controlled_vocabulary_term_id,
      :type,
      :attribute_subject_id,
      :attribute_subject_type,
      :value
    ],

    protocol_relationships_attributes: [
      :id,
      :_destroy,
      :protocol_id
    ],

    origin_relationships_attributes: [
      :id,
      :_destroy,
      :old_object_id,
      :old_object_type
    ]
  )
end

#filter_params ⇒ Object (private) 



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# File 'app/controllers/extracts_controller.rb', line 106

def filter_params
  params.permit(
    :id,
    :user_date_end,
    :user_date_start,
    :user_id,
    :identifier,
    :identifier_end,
    :identifier_exact,
    :identifier_start,
    :identifier_type,
    :recent,
    :otu_id,
    :collection_object_id,
    :repository_id,
    :extract_start_date_range,
    :extract_end_date_range,
    :ancestor_id,
    :sequences,
    :extract_origin,
    :verbatim_anatomical_origin,
    :exact_verbatim_anatomical_origin,
    :protocol_id,
    collection_object_id: [],
    otu_id: [],
    protocol_id_and: [],
    protocol_id_or: [],
    keyword_id_and: [],
    keyword_id_or: [],
    repository_id: [],
  )
end

#index ⇒ Object

GET /extracts GET /extracts.json



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# File 'app/controllers/extracts_controller.rb', line 9

def index
  respond_to do |format|
    format.html do
      @recent_objects = Extract.recent_from_project_id(sessions_current_project_id).order(updated_at: :desc).limit(10)
      render '/shared/data/all/index'
    end
    format.json {
      @extracts = Queries::Extract::Filter
        .new(filter_params).all.where(project_id: sessions_current_project_id)
        .page(params[:page]).per(params[:per] || 500)
    }
  end
end

#list ⇒ Object 



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# File 'app/controllers/extracts_controller.rb', line 37

def list
  @extracts = Extract.with_project_id(sessions_current_project_id).page(params[:page])
end

#new ⇒ Object

GET /extracts/new



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# File 'app/controllers/extracts_controller.rb', line 29

def new
  @extract = Extract.new
end

#search ⇒ Object 



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# File 'app/controllers/extracts_controller.rb', line 88

def search
  if params[:id].blank?
    redirect_to extracts_path, alert: 'You must select an item from the list with a click or tab press before clicking show.'
  else
    redirect_to extract_path(params[:id])
  end
end

#select_options ⇒ Object

GET /extracts/select_options



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# File 'app/controllers/extracts_controller.rb', line 97

def select_options
  @extracts = Extract.select_optimized(sessions_current_user_id, sessions_current_project_id)
end

#set_extract ⇒ Object (private) 



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# File 'app/controllers/extracts_controller.rb', line 102

def set_extract
  @extract = Extract.where(project_id: sessions_current_project_id).find(params[:id])
end

#show ⇒ Object

GET /extracts/1 GET /extracts/1.json



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# File 'app/controllers/extracts_controller.rb', line 25

def show
end

#update ⇒ Object

PATCH/PUT /extracts/1 PATCH/PUT /extracts/1.json



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# File 'app/controllers/extracts_controller.rb', line 59

def update
  respond_to do |format|
    if @extract.update(extract_params)
      format.html { redirect_to @extract, notice: 'Extract was successfully updated.' }
      format.json { render :show, status: :ok, location: @extract }
    else
      format.html { render :edit }
      format.json { render json: @extract.errors, status: :unprocessable_entity }
    end
  end
end