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# File 'lib/batch_load/import/descriptors/modify_gene_descriptor_interpreter.rb', line 11
def build_descriptors
@total_data_lines = 0
i = 0
csv.each do |row|
i += 1
parse_result = BatchLoad::RowParse.new
parse_result.objects[:descriptor] = []
@processed_rows[i] = parse_result
begin gene_name = row['gene_name']
gene_descriptor = Descriptor::Gene.find_by(name: gene_name)
next if gene_descriptor.blank?
primers_logic = { "forward_primers": [], "reverse_primers": [] }
['forward_primers', 'reverse_primers'].each do |primer_type|
primers = row[primer_type]
next if primers.blank?
sequence_relationship_type = 'SequenceRelationship::' + primer_type.singularize.camelize
primers.split(', ').each do |primer_name|
primer_sequence = Sequence.with_any_value_for(:name, primer_name).take
next if primer_sequence.blank?
gene_attribute = GeneAttribute.find_by(descriptor: gene_descriptor, sequence: primer_sequence, sequence_relationship_type: sequence_relationship_type)
next if gene_attribute.blank?
primers_logic[primer_type.to_sym].push(gene_attribute.to_logic_literal)
end
end
gene_descriptor_logic = ''
gene_descriptor_logic += '(' + primers_logic[:forward_primers].join(' OR ') + ')'
gene_descriptor_logic += ' AND '
gene_descriptor_logic += '(' + primers_logic[:reverse_primers].join(' OR ') + ')'
gene_descriptor.gene_attribute_logic = gene_descriptor_logic
parse_result.objects[:descriptor].push(gene_descriptor)
@total_data_lines += 1
end
end
@total_lines = i
end
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