Module: Vendor::Colrapi

Defined in:
lib/vendor/colrapi.rb

Overview

A middle-layer wrapper between Colrapi and TaxonWorks

Constant Summary collapse

DATASETS = 
{
    col: '3LR'
}.freeze

Class Method Summary collapse

Class Method Details

.align_classification(taxonworks_object, colrapi_result) ⇒ Array

2 row alignment facilitator

Returns:

  • (Array) —

    with hashes {

    { rank: 'species'
  col: 'name',
  taxonworks: 'name'
  rank_origin: :col, :taxonworks, :both
}



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# File 'lib/vendor/colrapi.rb', line 26

def self.align_classification(taxonworks_object, colrapi_result)
  r = []
end

.collection_object_scientific_name(collection_object) ⇒ Object

Extend to buffered with GNA in middle layer? Text only, taxon name cached or OTU name for the most recent determination



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# File 'lib/vendor/colrapi.rb', line 88

def self.collection_object_scientific_name(collection_object)
  return nil if collection_object.nil?
  if a = collection_object.taxon_determinations.order(:position)&.first
    if a.otu.taxon_name
      a.otu.taxon_name.cached
    else
      a.otu.name
    end
  else
    nil
  end
end

.name_status(taxonworks_object, colrapi_result) ⇒ Object

},

    accepted: {}
   }
  ]
}

Returns:

  • hash { taxonworks_name: name }

    col_results: [
    { usage: {
       name:
       status:



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# File 'lib/vendor/colrapi.rb', line 45

def self.name_status(taxonworks_object, colrapi_result)
  o = taxonworks_object

  r = {
      taxonworks_name: collection_object_scientific_name(o),
      col_usages: [],
      provisional_status: :accepted,
  }

  if colrapi_result.dig('total') == 0
    r[:provisional_status] = :undeterminable
    return r
  end

  colrapi_result['result'].each do |u|
    i = u['usage']

    d = {
      usage: {},
      accepted: {}
    }

    d[:usage][:name] = i.dig *%w{name scientificName}
    d[:usage][:status] = i['status']

    if i['accepted']
      d[:accepted][:name] = i.dig *%w{accepted name scientificName}
      d[:accepted][:status] = i.dig *%w{accepted status}
    end

    if d[:usage][:status] == 'synonym' && (d[:usage][:name] == r[:taxonworks_name])
      r[:provisional_status] = :synonym
    end

    r[:col_usages].push d
  end
  r
end