Class: AnatomicalPartsController

Inherits:
ApplicationController show all
Includes:
DataControllerConfiguration::ProjectDataControllerConfiguration
Defined in:
app/controllers/anatomical_parts_controller.rb

Constant Summary

Constants included from ProjectsHelper

ProjectsHelper::CLASSIFIER, ProjectsHelper::CLASSIFIER_ANNOTATION

Instance Method Summary collapse

Methods included from DataControllerConfiguration::ProjectDataControllerConfiguration

#annotator_params

Methods included from RedirectHelper

#destroy_redirect

Methods included from RequestType

#json_request?

Methods included from LogRecent

#log_user_recent_route

Methods included from Cookies

#digest_cookie, #digested_cookie_exists?

Methods included from Whitelist

#whitelist_constantize

Methods included from ProjectsHelper

#cumulative_gb_per_year, #cumulative_projects_created_per_year, #document_cumulative_gb_per_year, #document_gb_per_year, #gb_per_year, #image_cumulative_gb_per_year, #image_gb_per_year, #invalid_object, #project_classification, #project_link, #project_login_link, #project_matches, #project_tag, #projects_list, #projects_search_form, #sound_cumulative_gb_per_year, #sound_gb_per_year, #taxonworks_classification, #week_in_review_graphs

Methods included from Api::Intercept

#intercept_api

Methods included from TokenAuthentication

#intercept_project, #intercept_user, #intercept_user_or_project, #project_token_authenticate, #token_authenticate

Instance Method Details

#anatomical_part_params ⇒ Object (private)

Only allow a list of trusted parameters through.



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# File 'app/controllers/anatomical_parts_controller.rb', line 149

def anatomical_part_params
  params.require(:anatomical_part).permit(:name, :uri, :uri_label,
    :is_material, :preparation_type_id, :preparation_type,
    inbound_origin_relationship_attributes: [:old_object_id, :old_object_type])
end

#autocomplete ⇒ Object 



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# File 'app/controllers/anatomical_parts_controller.rb', line 94

def autocomplete
  @anatomical_parts = ::Queries::AnatomicalPart::Autocomplete.new(
    params.require(:term),
    project_id: sessions_current_project_id,
  ).autocomplete
end

#children_of ⇒ Object 



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# File 'app/controllers/anatomical_parts_controller.rb', line 123

def children_of
  @origin_relationships = OriginRelationship
    .where(
      old_object_id: params[:parent_id],
      old_object_type: params[:parent_type],
      new_object_type: 'AnatomicalPart'
    )
    .includes(:new_object)

    render json: @origin_relationships.map(&:new_object)
end

#create ⇒ Object

POST /anatomical_parts or /anatomical_parts.json



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# File 'app/controllers/anatomical_parts_controller.rb', line 41

def create
  @anatomical_part = AnatomicalPart.new(anatomical_part_params)
  if @anatomical_part.save
    @origin_relationship = @anatomical_part.inbound_origin_relationship
    render :show, status: :created
  else
    render json: { errors: @anatomical_part.errors.full_messages }, status: :unprocessable_entity
  end
end

#destroy ⇒ Object

DELETE /anatomical_parts/1 or /anatomical_parts/1.json



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# File 'app/controllers/anatomical_parts_controller.rb', line 61

def destroy
  @anatomical_part.destroy!

  respond_to do |format|
    format.html {
      redirect_to anatomical_parts_path,
        notice: 'Anatomical part was successfully destroyed.',
        status: :see_other
    }
    format.json {
      head :no_content
    }
  end
rescue ActiveRecord::RecordNotDestroyed => e
  respond_to do |format|
    format.html {
      flash[:alert] = @anatomical_part.errors.full_messages.to_sentence
      redirect_back(fallback_location: anatomical_parts_path)
    }
    format.json {
      render json: { errors: @anatomical_part.errors.full_messages },
        status: :unprocessable_entity
    }
  end
end

#edit ⇒ Object

GET /anatomical_parts/1/edit



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# File 'app/controllers/anatomical_parts_controller.rb', line 36

def edit
  redirect_to edit_anatomical_part_task_path anatomical_part_id: @anatomical_part.id
end

#graph ⇒ Object 



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# File 'app/controllers/anatomical_parts_controller.rb', line 114

def graph
  @nodes, @origin_relationships =
    AnatomicalPart.graph(params.require(:id), params.require(:type))
end

#index ⇒ Object

GET /anatomical_parts or /anatomical_parts.json



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# File 'app/controllers/anatomical_parts_controller.rb', line 8

def index
  respond_to do |format|
    format.html do
      @recent_objects = AnatomicalPart
        .where(project_id: sessions_current_project_id)
        .order(updated_at: :desc).limit(10)

      render '/shared/data/all/index'
    end
    format.json do
      @anatomical_parts = ::Queries::AnatomicalPart::Filter.new(params).all
        .page(params[:page])
        .per(params[:per])
        .order('anatomical_parts.cached')
    end
  end
end

#list ⇒ Object 



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# File 'app/controllers/anatomical_parts_controller.rb', line 87

def list
  @anatomical_parts = AnatomicalPart
    .where(project_id: sessions_current_project_id)
    .page(params[:page])
    .per(params[:per])
end

#new ⇒ Object

GET /anatomical_parts/new



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# File 'app/controllers/anatomical_parts_controller.rb', line 31

def new
  redirect_to anatomical_parts_graph_task_path
end

#ontologies ⇒ Object 



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# File 'app/controllers/anatomical_parts_controller.rb', line 119

def ontologies
  render json: ::Hookkaido.ontologies
end

#ontology_autocomplete ⇒ Object 



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# File 'app/controllers/anatomical_parts_controller.rb', line 135

def ontology_autocomplete
  ontologies = params[:ontologies] || ['uberon']
  @term = params[:term]
  @parts_list = ::Hookkaido.search(@term, ontologies:)
  @parts_list = @parts_list[:results]
end

#search ⇒ Object 



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# File 'app/controllers/anatomical_parts_controller.rb', line 101

def search
  if params[:id].blank?
    redirect_to(anatomical_part_path,
                alert: 'You must select an item from the list with a click or tab press before clicking show.')
  else
    redirect_to anatomical_part_path(params[:id])
  end
end

#select_options ⇒ Object 



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# File 'app/controllers/anatomical_parts_controller.rb', line 110

def select_options
  @anatomical_parts = AnatomicalPart.select_optimized(sessions_current_user_id, sessions_current_project_id, params[:target])
end

#set_anatomical_part ⇒ Object (private) 



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# File 'app/controllers/anatomical_parts_controller.rb', line 144

def set_anatomical_part
  @anatomical_part = AnatomicalPart.find(params[:id])
end

#show ⇒ Object

GET /anatomical_parts/1 or /anatomical_parts/1.json



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# File 'app/controllers/anatomical_parts_controller.rb', line 27

def show
end

#update ⇒ Object

PATCH/PUT /anatomical_parts/1.json



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# File 'app/controllers/anatomical_parts_controller.rb', line 52

def update
  if @anatomical_part.update(anatomical_part_params)
    render :show, status: :ok, location: @anatomical_part
  else
    render json: @anatomical_part.errors, status: :unprocessable_entity
  end
end