Class: BiologicalAssociationsController

Inherits:
ApplicationController show all
Includes:
DataControllerConfiguration::ProjectDataControllerConfiguration
Defined in:
app/controllers/biological_associations_controller.rb

Instance Method Summary collapse

Methods included from DataControllerConfiguration::ProjectDataControllerConfiguration

#annotator_params

Methods included from RequestType

#json_request?

Methods included from LogRecent

#log_user_recent_route

Methods included from Cookies

#digest_cookie, #digested_cookie_exists?

Methods included from Whitelist

#whitelist_constantize

Methods included from ProjectsHelper

#invalid_object, #project_link, #project_matches, #project_tag, #projects_list, #projects_search_form

Methods included from Api::Intercept

#intercept_api

Methods included from TokenAuthentication

#intercept_project, #intercept_user, #intercept_user_or_project, #project_token_authenticate, #token_authenticate

Instance Method Details

#api_index ⇒ Object 



94
95
96
97
98
99
100
101
 
# File 'app/controllers/biological_associations_controller.rb', line 94

def api_index
  @biological_associations = Queries::BiologicalAssociation::Filter.new(api_params).all
    .where(project_id: sessions_current_project_id)
    .order('biological_associations.id')
    .page(params[:page])
    .per(params[:per])
  render '/biological_associations/api/v1/index'
end

#api_params ⇒ Object (private) 



115
116
117
118
119
120
121
122
123
 
# File 'app/controllers/biological_associations_controller.rb', line 115

def api_params
  params.permit(:subject_global_id, :object_global_id, :any_global_id, :biological_relationship_id)

  # Shallow resource hack
  if !params[:collection_object_id].blank? && c = CollectionObject.where(project_id: sessions_current_project_id).find(params[:collection_object_id])
    params[:any_global_id] = c.to_global_id.to_s
  end
  params
end

#api_show ⇒ Object 



90
91
92
 
# File 'app/controllers/biological_associations_controller.rb', line 90

def api_show
  render '/biological_associations/api/v1/show'
end

#biological_association_params ⇒ Object (private) 



129
130
131
132
133
134
135
136
137
138
 
# File 'app/controllers/biological_associations_controller.rb', line 129

def biological_association_params
  params.require(:biological_association).permit(
    :biological_relationship_id, :biological_association_subject_id, :biological_association_subject_type, 
    :biological_association_object_id, :biological_association_object_type,
    :subject_global_id,
    :object_global_id,
    origin_citation_attributes: [:id, :_destroy, :source_id, :pages],
    citations_attributes: [:id, :is_original, :_destroy, :source_id, :pages, :citation_object_id, :citation_object_type],
  )
end

#create ⇒ Object

POST /biological_associations POST /biological_associations.json



44
45
46
47
48
49
50
51
52
53
54
55
 
# File 'app/controllers/biological_associations_controller.rb', line 44

def create
  @biological_association = BiologicalAssociation.new(biological_association_params)
  respond_to do |format|
    if @biological_association.save
      format.html { redirect_to @biological_association, notice: 'Biological association was successfully created.' }
      format.json { render :show, status: :created, location: @biological_association }
    else
      format.html { render :new }
      format.json { render json: @biological_association.errors, status: :unprocessable_entity }
    end
  end
end

#destroy ⇒ Object

DELETE /biological_associations/1 DELETE /biological_associations/1.json



73
74
75
76
77
78
79
 
# File 'app/controllers/biological_associations_controller.rb', line 73

def destroy
  @biological_association.destroy
  respond_to do |format|
    format.html { redirect_to biological_associations_url, notice: 'Biological association was successfully destroyed.' }
    format.json { head :no_content }
  end
end

#edit ⇒ Object

GET /biological_associations/1/edit



35
36
 
# File 'app/controllers/biological_associations_controller.rb', line 35

def edit
end

#filter_params ⇒ Object (private) 



105
106
107
108
109
110
111
112
113
 
# File 'app/controllers/biological_associations_controller.rb', line 105

def filter_params
  params.permit(:subject_global_id, :object_global_id, :any_global_id, :biological_relationship_id)

  # Shallow resource hack
  if !params[:collection_object_id].blank? && c = CollectionObject.where(project_id: sessions_current_project_id).find(params[:collection_object_id])
    params[:any_global_id] = c.to_global_id.to_s
  end
  params
end

#index ⇒ Object

GET /biological_associations GET /biological_associations.json



8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
 
# File 'app/controllers/biological_associations_controller.rb', line 8

def index
  respond_to do |format|
    format.html {
      @recent_objects = BiologicalAssociation.recent_from_project_id(sessions_current_project_id).order(updated_at: :desc).limit(10)
      render '/shared/data/all/index'
    }
    format.json {
      @biological_associations = Queries::BiologicalAssociation::Filter
        .new(filter_params)
        .all
        .where(project_id: sessions_current_project_id)
        .page(params[:page] || 1).per(params[:per] || 500)
    }
  end
end

#list ⇒ Object 



38
39
40
 
# File 'app/controllers/biological_associations_controller.rb', line 38

def list
  @biological_associations = BiologicalAssociation.with_project_id(sessions_current_project_id).order(:id).page(params[:page]) #.per(10)
end

#new ⇒ Object

GET /biological_associations/new



30
31
32
 
# File 'app/controllers/biological_associations_controller.rb', line 30

def new
  @biological_association = BiologicalAssociation.new
end

#search ⇒ Object 



81
82
83
84
85
86
87
 
# File 'app/controllers/biological_associations_controller.rb', line 81

def search
  if params[:id].blank?
    redirect_to biological_associations_path, notice: 'You must select an item from the list with a click or tab press before clicking show.'
  else
    redirect_to biological_association_path(params[:id])
  end
end

#set_biological_association ⇒ Object (private) 



125
126
127
 
# File 'app/controllers/biological_associations_controller.rb', line 125

def set_biological_association
  @biological_association = BiologicalAssociation.where(project_id: sessions_current_project_id).find(params[:id])
end

#show ⇒ Object

GET /biological_associations/1 GET /biological_associations/1.json



26
27
 
# File 'app/controllers/biological_associations_controller.rb', line 26

def show
end

#update ⇒ Object

PATCH/PUT /biological_associations/1 PATCH/PUT /biological_associations/1.json



59
60
61
62
63
64
65
66
67
68
69
 
# File 'app/controllers/biological_associations_controller.rb', line 59

def update
  respond_to do |format|
    if @biological_association.update(biological_association_params)
      format.html { redirect_to @biological_association, notice: 'Biological association was successfully updated.' }
      format.json { render :show, status: :ok, location: @biological_association }
    else
      format.html { render :edit }
      format.json { render json: @biological_association.errors, status: :unprocessable_entity }
    end
  end
end