Module: ControlledVocabularyTermsHelper

Defined in:
app/helpers/controlled_vocabulary_terms_helper.rb

Instance Method Summary collapse

Instance Method Details

#controlled_vocabulary_term_autocomplete_tag(controlled_vocabulary_term, term = nil) ⇒ Object 



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# File 'app/helpers/controlled_vocabulary_terms_helper.rb', line 19

def controlled_vocabulary_term_autocomplete_tag(controlled_vocabulary_term, term = nil)
  s = [ controlled_vocabulary_term_tag(controlled_vocabulary_term),
    content_tag(:span, controlled_vocabulary_term.type, class: [:feedback, 'feedback-secondary', 'feedback-thin']),
    content_tag(:span, pluralize( controlled_vocabulary_term_use(controlled_vocabulary_term), 'use'), class: [:feedback, 'feedback-info', 'feedback-thin'])
  ].compact.join(' ')
  mark_tag(s, term)
end

#controlled_vocabulary_term_link(controlled_vocabulary_term) ⇒ Object 



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# File 'app/helpers/controlled_vocabulary_terms_helper.rb', line 60

def controlled_vocabulary_term_link(controlled_vocabulary_term)
  return nil if controlled_vocabulary_term.nil?
  link_to(controlled_vocabulary_term_tag(controlled_vocabulary_term.metamorphosize).html_safe, controlled_vocabulary_term.metamorphosize)
end

#controlled_vocabulary_term_tag(controlled_vocabulary_term) ⇒ Object 



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# File 'app/helpers/controlled_vocabulary_terms_helper.rb', line 3

def controlled_vocabulary_term_tag(controlled_vocabulary_term)
  return nil if controlled_vocabulary_term.nil?
  content_tag(
    :span,
    content_tag(:span, controlled_vocabulary_term.name),
    title: controlled_vocabulary_term.definition,
    class: ['pill', controlled_vocabulary_term.type.tableize.singularize],
    style: ( controlled_vocabulary_term.css_color ? "background-color: #{ controlled_vocabulary_term.css_color}; color: #{ controlled_vocabulary_term.css_color}" : nil ),
    data: { 'global-id' => (controlled_vocabulary_term.persisted? ? controlled_vocabulary_term.metamorphosize.to_global_id.to_s : nil) } ) # need to preview CVTs that are not saved
end

#controlled_vocabulary_term_type_select_options ⇒ Object 



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# File 'app/helpers/controlled_vocabulary_terms_helper.rb', line 65

def controlled_vocabulary_term_type_select_options
  %w[Keyword Topic Predicate BiologicalProperty BiocurationGroup BiocurationClass ConfidenceLevel]
end

#controlled_vocabulary_term_use(controlled_vocabulary_term) ⇒ Object 



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# File 'app/helpers/controlled_vocabulary_terms_helper.rb', line 27

def controlled_vocabulary_term_use(controlled_vocabulary_term)
  return nil if controlled_vocabulary_term.nil?

  a = { project_id: sessions_current_project_id }
  case controlled_vocabulary_term.type
  when 'Topic'
    CitationTopic.where(topic: controlled_vocabulary_term).where(a).count +
      Content.where(topic: controlled_vocabulary_term).where(a).count
  when 'Tag'
    Tag.where(keyword: controlled_vocabulary_term).where(a).count
  when 'BiologicalProperty'
    BiocurationClassification.where(biocuration_class: controlled_vocabulary_term).where(a).count
  when 'Predicate'
    InternalAttribute.where(predicate: controlled_vocabulary_term).where(a).count
  when 'ConfidenceLevel'
    Confidence.where(confidence_level: controlled_vocabulary_term).where(a).count
  when 'Keyword'
    Tag.where(keyword_id: controlled_vocabulary_term.id).where(a).count
  when 'BiocurationClass'
    BiocurationClassification
      .where(biocuration_class_id: controlled_vocabulary_term.id).where(a).count
  when 'BiocurationGroup'
    # Count of the uses of the group's classes.
    BiocurationClassification
      .joins(biocuration_class: :keywords)
      .where(keywords: { id: controlled_vocabulary_term.id })
      .where(a)
      .count
  else
    'n/a'
  end
end

#controlled_vocabulary_terms_across_projects_data(user) ⇒ Object 



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# File 'app/helpers/controlled_vocabulary_terms_helper.rb', line 77

def controlled_vocabulary_terms_across_projects_data(user)
  projects = user.projects

  terms, term_types = [], []
  data = projects.inject({}) {|hsh, i| hsh[i.id] = []; hsh }

  project_names = ['Term', 'Type']

  projects.joins(:controlled_vocabulary_terms).select('projects.*, COUNT(controlled_vocabulary_terms.*) c').group('projects.id').order(:c).each do |p|
    project_names.push(p.name)
    p.controlled_vocabulary_terms.order(:type, :name).each do |t|
      unless terms.index(t.name)
        terms.push t.name
        term_types.push t.type
      end

      data[p.id][terms.index(t.name)] = true
    end
  end

  # The columns
  y = data.values

  # Sort columns to place those with more values to the right
  y.sort!{|a,b| b.compact.count <=> a.compact.count}

  # Injdect the CVT type column
  y.unshift(term_types)

  z = terms.zip(*y)
  z.unshift project_names
  z
end

#controlled_vocabulary_terms_across_projects_table(data) ⇒ Object 



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# File 'app/helpers/controlled_vocabulary_terms_helper.rb', line 111

def controlled_vocabulary_terms_across_projects_table(data)
  t = '<table class="table table-striped tablesorter"><thead>'.html_safe
  t << tag.tr( data.shift.collect{|c| tag.th(c) }.join.html_safe )
  t << '</thead><tbody>'.html_safe

  data.each do |r|
    t << tag.tr( r.collect{|c| tag.td(c) }.join.html_safe )
  end

  t << '</tbody></table>'.html_safe
  t.html_safe
end

#controlled_vocabulary_terms_across_projects_tag(user) ⇒ Object 



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# File 'app/helpers/controlled_vocabulary_terms_helper.rb', line 124

def controlled_vocabulary_terms_across_projects_tag(user)
  d = controlled_vocabulary_terms_across_projects_data(user)
  controlled_vocabulary_terms_across_projects_table(d)
end

#controlled_vocabulary_terms_search_form ⇒ Object 



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# File 'app/helpers/controlled_vocabulary_terms_helper.rb', line 73

def controlled_vocabulary_terms_search_form
  render('/controlled_vocabulary_terms/quick_search_form')
end

#label_for_controlled_vocabulary_term(controlled_vocabulary_term) ⇒ Object 



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# File 'app/helpers/controlled_vocabulary_terms_helper.rb', line 14

def label_for_controlled_vocabulary_term(controlled_vocabulary_term)
  return nil if controlled_vocabulary_term.nil?
  controlled_vocabulary_term.name
end

#term_and_definition_tag(controlled_vocabulary_term) ⇒ Object 



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# File 'app/helpers/controlled_vocabulary_terms_helper.rb', line 69

def term_and_definition_tag(controlled_vocabulary_term)
  content_tag(:span, controlled_vocabulary_term) + ': ' + content_tag(:span, controlled_vocabulary_term.definition)
end