Class: Specimen

Inherits:
CollectionObject::BiologicalCollectionObject show all
Defined in:
app/models/specimen.rb

Overview

A Specimen is a single (by single we mean a curator has enumerated the object as 1), physical, and biological individual that has been collected.

Constant Summary

Constants included from Shared::IsDwcOccurrence

Shared::IsDwcOccurrence::DWC_DELIMITER, Shared::IsDwcOccurrence::VIEW_EXCLUSIONS

Instance Attribute Summary collapse

Instance Method Summary collapse

Methods inherited from CollectionObject::BiologicalCollectionObject

#current_taxon_determination=, #reorder_determinations_by, #sv_determined_before_collected, #sv_fix_missing_determination, #sv_missing_biocuration_classification, #sv_missing_collecting_event, #sv_missing_determination, #sv_missing_preparation_type, #sv_missing_repository

Methods included from CollectionObject::DwcExtensions

#dwc_associated_media, #dwc_associated_taxa, #dwc_caste, #dwc_catalog_number, #dwc_collection_code, #dwc_event_time, #dwc_higher_classification, #dwc_individual_count, #dwc_institution_code, #dwc_institution_id, #dwc_internal_attribute_for, #dwc_life_stage, #dwc_occurrence_remarks, #dwc_occurrence_status, #dwc_other_catalog_numbers, #dwc_preparations, #dwc_record_number, #dwc_sex, #dwc_type_status, #dwc_verbatim_label, #is_fossil?

Methods included from Shared::IsDwcOccurrence

#dwc_occurrence_attribute_values, #dwc_occurrence_attributes, #dwc_occurrence_basis, #dwc_occurrence_id, #dwc_otu_id, #get_dwc_occurrence, #set_dwc_occurrence

Instance Attribute Details

#total ⇒ 1

Returns a specimen always has a total of one.

Returns:

  • (1) —

    a specimen always has a total of one.



8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
 
# File 'app/models/specimen.rb', line 8

class Specimen < CollectionObject::BiologicalCollectionObject

  is_origin_for 'Specimen', 'Extract', 'AssertedDistribution', 'Sequence', 'Sound', 'AnatomicalPart'
  originates_from 'Specimen', 'Lot', 'RangedLot'

  with_options if: -> {self.type == 'Specimen'} do |s|
    s.before_validation :check_and_set_total
    s.validates :total, inclusion: { in: 1..1 }, presence: true
  end

  protected

  def check_and_set_total
    if self.total.blank?
      self.total ||= 1
    end
  end

end

Instance Method Details

#check_and_set_total ⇒ Object (protected) 



20
21
22
23
24
 
# File 'app/models/specimen.rb', line 20

def check_and_set_total
  if self.total.blank?
    self.total ||= 1
  end
end