Class: CollectionObject::BiologicalCollectionObject
- Inherits:
-
CollectionObject
- Object
- ActiveRecord::Base
- ApplicationRecord
- CollectionObject
- CollectionObject::BiologicalCollectionObject
- Defined in:
- app/models/collection_object/biological_collection_object.rb
Overview
A collection object that is classified as being biological in origin.
!! See also CollectionObject::BiologicalExtensions
Constant Summary
Constants inherited from CollectionObject
BUFFERED_ATTRIBUTES, CO_OTU_HEADERS, GRAPH_ENTRY_POINTS
Constants included from DwcExtensions
DwcExtensions::DWC_OCCURRENCE_MAP
Constants included from SoftValidation
SoftValidation::ANCESTORS_WITH_SOFT_VALIDATIONS
Instance Attribute Summary
Attributes inherited from CollectionObject
#accessioned_at, #buffered_collecting_event, #buffered_determinations, #buffered_other_labels, #collecting_event_id, #deaccession_reason, #deaccessioned_at, #preparation_type_id, #project_id, #ranged_lot_category_id, #respository_id, #total, #type
Attributes included from DwcExtensions
Instance Method Summary collapse
- #current_taxon_determination=(taxon_determination) ⇒ Object
-
#reorder_determinations_by(attribute = :date) ⇒ Boolean
Nil values are sent to the bottom.
- #sv_missing_collecting_event ⇒ Object protected
- #sv_missing_determination ⇒ Object protected
- #sv_missing_preparation_type ⇒ Object protected
- #sv_missing_repository ⇒ Object protected
Methods inherited from CollectionObject
#annotations, #assign_type_if_total_or_ranged_lot_category_id_provided, bc_attributes, bc_headers, #biological?, breakdown_buffered, breakdown_status, ce_attributes, ce_headers, #check_that_both_of_category_and_total_are_not_present, #check_that_either_total_or_ranged_lot_category_id_is_present, co_attributes, co_headers, #collecting_event_belongs_to_project, earliest_date, from_collecting_events, generate_report_download, in_date_range, in_geographic_item, latest_date, #preferred_catalog_number, #reject_collecting_event, select_optimized, selected_column_names, sequence_join_hack_sql, #sv_missing_accession_fields, #sv_missing_deaccession_fields, used_recently
Methods included from BiologicalExtensions
#missing_determination, #name_at_rank_string, #reject_otus, #reject_taxon_determinations
Methods included from DwcExtensions
#dwc_catalog_number, #dwc_country, #dwc_county, #dwc_event_date, #dwc_event_time, #dwc_family, #dwc_genus, #dwc_georeference_protocol, #dwc_individual_count, #dwc_institution_code, #dwc_institution_id, #dwc_latitude, #dwc_locality, #dwc_longitude, #dwc_nomenclatural_code, #dwc_preparations, #dwc_recorded_by, #dwc_scientific_name, #dwc_specific_epithet, #dwc_state_province, #dwc_taxon_name_authorship, #dwc_verbatim_locality, #set_taxonomy
Methods included from Shared::IsDwcOccurrence
#dwc_occurrence_attribute_values, #dwc_occurrence_attributes, #get_dwc_occurrence, #set_dwc_occurrence
Methods included from SoftValidation
#clear_soft_validations, #fix_soft_validations, #soft_fixed?, #soft_valid?, #soft_validate, #soft_validated?, #soft_validations
Methods included from Shared::IsData
#errors_excepting, #full_error_messages_excepting, #identical, #is_community?, #is_destroyable?, #is_editable?, #is_in_use?, #is_in_users_projects?, #metamorphosize, #similar
Methods included from Shared::ProtocolRelationships
Methods included from Shared::Confidences
Methods included from Shared::OriginRelationship
#new_objects, #old_objects, #reject_origin_relationships, #set_origin
Methods included from Shared::Depictions
#has_depictions?, #image_array=, #reject_depictions, #reject_images
Methods included from Shared::Tags
#reject_tags, #tag_with, #tagged?, #tagged_with?
Methods included from Shared::Notes
#concatenated_notes_string, #reject_notes
Methods included from Shared::Identifiers
#identified?, #next_by_identifier, #previous_by_identifier, #reject_identifiers
Methods included from Shared::HasRoles
Methods included from Shared::Loanable
#has_been_loaned?, #loan_return_date, #on_loan?, #times_loaned
Methods included from Shared::DataAttributes
#import_attributes, #internal_attributes, #keyword_value_hash, #reject_data_attributes
Methods included from Shared::Containable
#contain, #containable?, #contained?, #contained_by?, #contained_siblings, #enclosing_containers, #put_in_container
Methods included from Shared::Citations
#cited?, #mark_citations_for_destruction, #nomenclature_date, #origin_citation_source_id, #reject_citations, #requires_citation?, #sources_by_topic_id
Methods included from Housekeeping
#has_polymorphic_relationship?
Methods inherited from ApplicationRecord
Instance Method Details
#current_taxon_determination=(taxon_determination) ⇒ Object
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# File 'app/models/collection_object/biological_collection_object.rb', line 21 def current_taxon_determination=(taxon_determination) if taxon_determinations.include?(taxon_determination) taxon_determination.move_to_top end end |
#reorder_determinations_by(attribute = :date) ⇒ Boolean
Returns nil values are sent to the bottom.
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# File 'app/models/collection_object/biological_collection_object.rb', line 29 def reorder_determinations_by(attribute = :date) determinations = [] if attribute == :date determinations = taxon_determinations.sort{|a, b| (b.sort_date || Time.utc(1, 1)) <=> (a.sort_date || Time.utc(1,1)) } else determinations = taxon_determinations.order(attribute) end begin TaxonDetermination.transaction do determinations.each_with_index do |td, i| td.update_column(:position, i + 1) end end rescue return false end return true end |
#sv_missing_collecting_event ⇒ Object (protected)
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# File 'app/models/collection_object/biological_collection_object.rb', line 55 def sv_missing_collecting_event soft_validations.add(:collecting_event_id, 'Collecting event is not selected') if self.collecting_event_id.nil? end |
#sv_missing_determination ⇒ Object (protected)
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# File 'app/models/collection_object/biological_collection_object.rb', line 51 def sv_missing_determination soft_validations.add(:base, 'Determination is missing') if self.reload_current_taxon_determination.nil? end |
#sv_missing_preparation_type ⇒ Object (protected)
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# File 'app/models/collection_object/biological_collection_object.rb', line 59 def sv_missing_preparation_type soft_validations.add(:preparation_type_id, 'Preparation type is not selected') if self.preparation_type_id.nil? end |
#sv_missing_repository ⇒ Object (protected)
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# File 'app/models/collection_object/biological_collection_object.rb', line 63 def sv_missing_repository soft_validations.add(:repository_id, 'Repository is not selected') if self.repository_id.nil? end |