Class: TaxonNameRelationship::Iczn::Invalidating

Inherits:
TaxonNameRelationship::Iczn show all
Defined in:
app/models/taxon_name_relationship/iczn/invalidating.rb

Direct Known Subclasses

Homonym, Misapplication, Synonym, Usage

Defined Under Namespace

Classes: Homonym, Misapplication, Synonym, Usage

Constant Summary collapse

NOMEN_URI = 
'http://purl.obolibrary.org/obo/NOMEN_0000272'.freeze

Constants included from SoftValidation

SoftValidation::ANCESTORS_WITH_SOFT_VALIDATIONS

Instance Attribute Summary

Attributes inherited from TaxonNameRelationship

#no_cached, #object_taxon_name_id, #project_id, #subject_taxon_name_id, #type

Class Method Summary collapse

Instance Method Summary collapse

Methods inherited from TaxonNameRelationship::Iczn

#sv_validate_priority, valid_object_ranks, valid_subject_ranks

Methods inherited from TaxonNameRelationship

collect_descendants_and_itself_to_s, collect_descendants_to_s, collect_to_s, #dwc_occurrences, gbif_status_of_object, #is_combination?, #is_invalidating?, nomen_uri, #nomenclature_date, #object_properties, #object_status_tag, parent, required_taxon_name_relationships, #set_cached_names_for_taxon_names, #subject_and_object_in_same_project, #subject_invalid_statuses, #subject_status_tag, #sv_coordinated_taxa, #sv_coordinated_taxa_object, #sv_fix_combination_relationship, #sv_fix_coordinated_object_taxa, #sv_fix_coordinated_subject_taxa, #sv_fix_not_specific_relationship, #sv_fix_objective_synonym_relationship, #sv_fix_subject_parent_update, #sv_objective_synonym_relationship, #sv_specific_relationship, #sv_synonym_linked_to_valid_name, #sv_validate_disjoint_object, #sv_validate_disjoint_relationships, #sv_validate_disjoint_subject, #sv_validate_priority, #sv_validate_required_relationships, #sv_validate_seniority, #type_class, #type_class=, #type_name, valid_object_ranks, valid_subject_ranks, #validate_object_and_subject_both_protonyms, #validate_object_must_equal_subject_for_uncertain_placement, #validate_rank_group, #validate_subject_and_object_are_not_identical, #validate_subject_and_object_ranks, #validate_subject_and_object_share_code, #validate_type, #validate_uniqueness_of_typification_object

Methods included from Shared::IsData

#errors_excepting, #full_error_messages_excepting, #identical, #is_community?, #is_destroyable?, #is_editable?, #is_in_use?, #is_in_users_projects?, #metamorphosize, #similar

Methods included from SoftValidation

#clear_soft_validations, #fix_for, #fix_soft_validations, #soft_fixed?, #soft_valid?, #soft_validate, #soft_validated?, #soft_validations, #soft_validators

Methods included from Shared::Notes

#concatenated_notes_string, #reject_notes

Methods included from Shared::Citations

#cited?, #mark_citations_for_destruction, #nomenclature_date, #origin_citation_source_id, #reject_citations, #requires_citation?, #sources_by_topic_id

Methods included from Housekeeping

#has_polymorphic_relationship?

Methods inherited from ApplicationRecord

transaction_with_retry

Class Method Details

.assignable ⇒ Object 



24
25
26
 
# File 'app/models/taxon_name_relationship/iczn/invalidating.rb', line 24

def self.assignable
  true
end

.assignment_method ⇒ Object

as.



56
57
58
59
 
# File 'app/models/taxon_name_relationship/iczn/invalidating.rb', line 56

def self.assignment_method
  # bus.set_as_iczn_invalid_of(aus)
  :iczn_set_as_invalid_of
end

.disjoint_object_classes ⇒ Object 



16
17
18
 
# File 'app/models/taxon_name_relationship/iczn/invalidating.rb', line 16

def self.disjoint_object_classes
  ICN_TAXON_NAME_CLASSIFICATION_NAMES + ICNP_TAXON_NAME_CLASSIFICATION_NAMES + ICVCN_TAXON_NAME_CLASSIFICATION_NAMES
end

.disjoint_subject_classes ⇒ Object 



10
11
12
13
14
 
# File 'app/models/taxon_name_relationship/iczn/invalidating.rb', line 10

def self.disjoint_subject_classes
  self.parent.disjoint_subject_classes +
      self.collect_descendants_to_s(TaxonNameClassification::Iczn::Available::Valid) +
      self.collect_to_s(TaxonNameClassification::Iczn::Available)
end

.disjoint_taxon_name_relationships ⇒ Object 



5
6
7
8
 
# File 'app/models/taxon_name_relationship/iczn/invalidating.rb', line 5

def self.disjoint_taxon_name_relationships
  self.parent.disjoint_taxon_name_relationships +
      self.collect_descendants_and_itself_to_s(TaxonNameRelationship::Iczn::Validating)
end

.gbif_status_of_subject ⇒ Object 



50
51
52
 
# File 'app/models/taxon_name_relationship/iczn/invalidating.rb', line 50

def self.gbif_status_of_subject
  'invalidum'
end

.inverse_assignment_method ⇒ Object 



61
62
63
64
 
# File 'app/models/taxon_name_relationship/iczn/invalidating.rb', line 61

def self.inverse_assignment_method
  # aus.iczn_invalid = bus   ## Equal to synonym in broad sense
  :iczn_invalid
end

.nomenclatural_priority ⇒ Object 



20
21
22
 
# File 'app/models/taxon_name_relationship/iczn/invalidating.rb', line 20

def self.nomenclatural_priority
  :direct
end

Instance Method Details

#object_status ⇒ Object 



37
38
39
 
# File 'app/models/taxon_name_relationship/iczn/invalidating.rb', line 37

def object_status
  'valid'
end

#object_status_connector_to_subject ⇒ Object 



45
46
47
 
# File 'app/models/taxon_name_relationship/iczn/invalidating.rb', line 45

def object_status_connector_to_subject
  ' for'
end

#similar_homonym_string ⇒ Boolean

Returns See use in Protonym.becomes_combination. It does not make sense to run this on all relationships.

Returns:

  • (Boolean) —

    See use in Protonym.becomes_combination. It does not make sense to run this on all relationships.



68
69
70
71
72
73
74
75
76
77
78
79
80
81
 
# File 'app/models/taxon_name_relationship/iczn/invalidating.rb', line 68

def similar_homonym_string
  a = subject_taxon_name
  b = object_taxon_name
  if a.is_species_rank? && a.cached_secondary_homonym_alternative_spelling.nil? && a.cached_valid_taxon_name_id == b.cached_valid_taxon_name_id
    return true if a.name == b.name || a.name == b.masculine_name || a.name == b.feminine_name || a.name == b.neuter_name
  elsif a.is_species_rank?
    return true if a.cached_secondary_homonym_alternative_spelling && (a.cached_secondary_homonym_alternative_spelling == b.cached_secondary_homonym_alternative_spelling)
  elsif a.is_genus_rank?
    return true if a.cached_primary_homonym_alternative_spelling && (a.cached_primary_homonym_alternative_spelling == b.cached_primary_homonym_alternative_spelling)
  else
    return false
  end
  false
end

#subject_properties ⇒ Object 



28
29
30
 
# File 'app/models/taxon_name_relationship/iczn/invalidating.rb', line 28

def subject_properties
  [ TaxonNameClassification::Iczn::Available::Invalid ]
end

#subject_status ⇒ Object 



33
34
35
 
# File 'app/models/taxon_name_relationship/iczn/invalidating.rb', line 33

def subject_status
  'unavailable or invalid'
end

#subject_status_connector_to_object ⇒ Object 



41
42
43
 
# File 'app/models/taxon_name_relationship/iczn/invalidating.rb', line 41

def subject_status_connector_to_object
  ', linked to'
end

#sv_not_specific_relationship ⇒ Object 



83
84
85
86
87
 
# File 'app/models/taxon_name_relationship/iczn/invalidating.rb', line 83

def sv_not_specific_relationship
  if self.subject_taxon_name.is_available?
    soft_validations.add(:type, 'Please specify the reason for the name being Invalid')
  end
end

#sv_synonym_relationship ⇒ Object 



89
90
91
92
93
 
# File 'app/models/taxon_name_relationship/iczn/invalidating.rb', line 89

def sv_synonym_relationship
  unless self.source
    soft_validations.add(:base, 'The original publication is not selected')
  end
end