Class: CachedMapItem
- Inherits:
-
ApplicationRecord
- Object
- ActiveRecord::Base
- ApplicationRecord
- CachedMapItem
- Defined in:
- app/models/cached_map_item.rb
Overview
A CachedMapItem is a summary of data from Georeferences and AssertedDistributions for mapping/visualization purposes.
All data are ‘cached` sensu TaxonWorks, i.e. derived from underlying data elsewhere. The intent is not to preserve the origin of the data, but rather provide a tool to summarize in (at present) a simple visualization.
Direct Known Subclasses
Defined Under Namespace
Classes: WebLevel1
Instance Attribute Summary collapse
-
#geographic_item_id ⇒ GeographicItem#id
, the id of GeographicItem, required.
-
#is_absent ⇒ Boolean?
If True then the corresponding AssertedDistributions have is_absent true.
-
#level0_geographic_name ⇒ String?
The level 0 name.
-
#level1_geographic_name ⇒ String?
The level 1 name.
-
#level2_geographic_name ⇒ String?
The level 2 name.
-
#otu_id ⇒ Otu#id
, the id of OTU, required.
-
#reference_count ⇒ Integer
reference this OTU/shape combination.
-
#type ⇒ String
Rails STI.
-
#untranslated ⇒ Boolean?
If True then the the shape could not be mapped, by any translation method, to a shape allowable for this CachedMapItemType.
Class Method Summary collapse
-
.batch_create_georeference_cached_map_items(batch_stubs) ⇒ Object
Create breadth-first CachedMapItems Only applicable to Georeferences.
- .cached_map_geographic_items_by_otu(otu_scope = nil) ⇒ Object
-
.cached_map_name_hierarchy(geographic_item_id) ⇒ Object
Check to see if a record is already present rather than-recalculate spatially CONSIDER: Use Reddis store to cache these results and look them up from there.
- .dynamic_buffer(geographic_item_id) ⇒ Object
- .stubs(source_object, cached_map_type) ⇒ Hash?
- .translate_by_alternate_shape(geographic_item_id, data_origin) ⇒ Object
-
.translate_by_cached_map_usage(geographic_item_id, cached_map_type) ⇒ Array
Return the geographic_item_id if it is already used in a CachedMapItem of the right type !! Probably redundant with translate_by_data_origin !!.
-
.translate_by_data_origin(geographic_item_id, data_origin) ⇒ Array
Return the geographic_item_id if it is already of the requested origin.
-
.translate_by_geographic_item_translation(geographic_item_id, cached_map_type) ⇒ Object
Check CachedMapItemTranslation for previous translations and use that if possible.
-
.translate_by_spatial_overlap(geographic_item_id, data_origin, buffer) ⇒ Array
Given a set of target shapes, return those that intersect with the provided shape.
- .translate_geographic_item_id(geographic_item_id, origin_type = nil, data_origin = nil, buffer = nil) ⇒ Array
-
.types_by_data_origin(data_origin = []) ⇒ Object
Array.
Methods included from Shared::IsData
#errors_excepting, #full_error_messages_excepting, #identical, #is_community?, #is_destroyable?, #is_editable?, #is_in_use?, #is_in_users_projects?, #metamorphosize, #similar
Methods included from Housekeeping::Projects
#annotates_community_object?, #is_community?, #set_project_id
Methods inherited from ApplicationRecord
Instance Attribute Details
#geographic_item_id ⇒ GeographicItem#id
Returns , the id of GeographicItem, required.
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# File 'app/models/cached_map_item.rb', line 44 class CachedMapItem < ApplicationRecord include Housekeeping::Projects include Housekeeping::Timestamps include Shared::IsData belongs_to :otu, inverse_of: :cached_map_items belongs_to :geographic_item, inverse_of: :cached_map_items validates_uniqueness_of :otu_id, scope: [:type, :geographic_item_id] validates_presence_of :otu, :geographic_item, :type # @return Hash # {country:, state:, county: } # Check to see if a record is already present rather than-recalculate spatially # CONSIDER: Use Reddis store to cache these results and look them up from there. # def self.cached_map_name_hierarchy(geographic_item_id) h = CachedMapItem .select('level0_geographic_name country, level1_geographic_name state, level2_geographic_name county') .where('level0_geographic_name IS NOT NULL OR level1_geographic_name IS NOT NULL OR level2_geographic_name IS NOT NULL') .find_by(geographic_item_id:) # finds first &.attributes &.compact! return h.symbolize_keys if h.present? GeographicItem.find(geographic_item_id).quick_geographic_name_hierarchy end def self.cached_map_geographic_items_by_otu(otu_scope = nil) return GeographicItem.none if otu_scope.nil? s = 'WITH otu_scope AS (' + otu_scope.all.to_sql + ') ' + ::GeographicItem .joins('JOIN cached_maps on cached_maps.geographic_item_id = geographic_items.id') .joins( 'JOIN otu_scope as otu_scope1 on otu_scope1.id = cached_maps.otu_id').to_sql ::GeographicItem.from('(' + s + ') as geographic_items').distinct end # @return Array def self.types_by_data_origin(data_origin = []) types = [] data_origin.each do |o| CachedMapItem.descendants.each do |d| types.push d.name if d::SOURCE_GAZETEERS.include?(o) end end types.uniq! types end # Check CachedMapItemTranslation for previous translations and use # that if possible def self.translate_by_geographic_item_translation(geographic_item_id, cached_map_type) a = CachedMapItemTranslation.where( cached_map_type:, geographic_item_id: ).pluck(:translated_geographic_item_id) .uniq # Just in case we duplicate the index, hopefully not needed (a.presence || []) end # @return [Array] # Return the geographic_item_id if it is already of the requested origin def self.translate_by_data_origin(geographic_item_id, data_origin) if ::GeographicAreasGeographicItem.where( geographic_item_id:, data_origin: ).any? return [geographic_item_id] else [] end end # @return [Array] # Return the geographic_item_id if it is already used in a CachedMapItem of the right type # !! Probably redundant with translate_by_data_origin !! def self.translate_by_cached_map_usage(geographic_item_id, cached_map_type) if ::CachedMapItem.where(geographic_item_id:, type: cached_map_type).any? return [geographic_item_id] else [] end end def self.translate_by_alternate_shape(geographic_item_id, data_origin) # GeographicItem is an alternate shape to a GeographicArea that *also* has a target gazeteer type if a = GeographicItem.find(geographic_item_id) .geographic_areas .joins(:geographic_items) .where(geographic_areas: { data_origin: }) .order(cached_total_area: :ASC) # smallest first .first &.id return [a] else [] end end # Given a set of target shapes, return those that intersect with the provided shape # # @param geographic_item_id [id] # the shape we are translating *from* # # @param data_origin # defines the shapes we are translating to # # #param buffer [nil, Decimal] in meters # shrink, (or grow) the shape we are translating from # Typical use is to shrink, so that differences in spatial resolution # are minimized (low res shapes intersect with high res in undesireable ways) # # @return [Array] of GeographicItem ids # def self.translate_by_spatial_overlap(geographic_item_id, data_origin, buffer) return [] if geographic_item_id.blank? # !! Assumes all GeographicArea shapes were loaded to multi_polygon # (pre-adapts us to a single geometry field type), however be # aware of this assumption # This is a fast first pass, pure intersection a = GeographicItem .joins(:geographic_areas_geographic_items) .where(geographic_areas_geographic_items: { data_origin: }) .where( "ST_Intersects( multi_polygon, ( select #{ GeographicItem::GEOGRAPHY_SQL } from geographic_items where geographic_items.id = #{geographic_item_id}) )" ) .pluck(:id) return a if buffer.nil? # Refine the pass by smoothing using buffer/st_within return GeographicItem .where(id: a) .where( GeographicItem.st_buffer_st_within(geographic_item_id, 0.0, buffer) ) .pluck(:id) end # @return [Array] # @param origin_type # 'AssertedDistribution' or 'Georeference' # # @param data_origin Array, String # like `ne_states` or ['ne_states, 'ne_countries'] # # @param buffer [nil, Decimal] # shr,ink (or grow) the size of the target shape, in meters # Typical use, do not apply for Georeferences, apply -10km for AssertedDistributions # def self.translate_geographic_item_id(geographic_item_id, origin_type = nil, data_origin = nil, buffer = nil) return nil if data_origin.blank? cached_map_type = types_by_data_origin(data_origin) a = nil b = buffer # All these methods depend on "prior knowledge" (not spatial calculations) if origin_type == 'AssertedDistribution' a = translate_by_geographic_item_translation(geographic_item_id, cached_map_type) return a if a.present? a = translate_by_data_origin(geographic_item_id, data_origin) return a if a.present? a = translate_by_alternate_shape(geographic_item_id, data_origin) return a if a.present? a = translate_by_cached_map_usage(geographic_item_id, cached_map_type) return a if a.present? b = dynamic_buffer(geographic_item_id) # -1000.0 # Monaco end translate_by_spatial_overlap(geographic_item_id, data_origin, b) end def self.dynamic_buffer(geographic_item_id) v = GeographicItem.select(:id, :cached_total_area).find(geographic_item_id).cached_total_area return 0 if v.nil? case Math.log10(v).to_i when 0..2 # 3786 0.0 when 3..6 # Perhaps no GeographicAreas hit here -100.0 when 7 # e.g. Monaco 122 -1000 when 8 -2000 # e.g. Calhoun Co. 27490 when 9 -4000 # 3786 Cooma-Monaro when 10..12 -12000.0 # e.g. Brazil 33794; Canada 37 !! Seems to be a sweet spot, remainder untested else #(max is 13) -20000.0 # Antarctic, 10 end end # @return [Hash, nil] def self.stubs(source_object, cached_map_type) # return nil unless source_object.persisted? o = source_object h = { origin_object: o, cached_map_type:, otu_id: [], geographic_item_id: [], origin_geographic_item_id: nil } geographic_item_id = nil name_hierarchy = nil otu_id = nil base_class_name = o.class.base_class.name case base_class_name when 'AssertedDistribution' geographic_item_id = o.geographic_area.default_geographic_item_id otu_id = [o.otu_id] when 'Georeference' geographic_item_id = o.geographic_item_id otu_id = o.otus.joins('LEFT JOIN taxon_determinations td on otus.id = td.otu_id').where(taxon_determinations: { position: 1 }).distinct.pluck(:id) end # Some AssertedDistribution don't have shapes if geographic_item_id h[:origin_geographic_item_id] = geographic_item_id h[:geographic_item_id] = translate_geographic_item_id( geographic_item_id, base_class_name, cached_map_type.safe_constantize::SOURCE_GAZETEERS ) if h[:geographic_item_id].blank? h[:geographic_item_id] = [geographic_item_id] h[:untranslated] = true end end h[:otu_id] = otu_id h end # Create breadth-first CachedMapItems # Only applicable to Georeferences. # # @params batch_stubs [Hash] # { # map_type: , # geographic_item_id: [] # otu_id: [ [otu_id, :project_id], ... [] ], # georeference_id: [ [geoference_id, :project_id] ], # } # # def self.batch_create_georeference_cached_map_items(batch_stubs) map_type = batch_stubs[:map_type] j = batch_stubs[:geographic_item_id] k = batch_stubs[:otu_id] j.each do |geographic_item_id| k.each do |otu_id| otu_id = otu_id.first project_id = otu_id.second begin a = CachedMapItem.find_or_initialize_by( type: map_type, otu_id:, geographic_item_id:, project_id:, ) if a.persisted? a.increment!(:reference_count) else a.reference_count = 1 a.save! end rescue ActiveRecord::RecordInvalid => e logger.debug e rescue PG::UniqueViolation logger.debug 'pg unique violation' end end end # Register the Georeferences registrations = [] batch_stubs[:georeference_id].each do |georeference_id, project_id| registrations.push({ cached_map_register_object_type: 'Georeference', cached_map_register_object_id: georeference_id, project_id:, created_at: Time.current, updated_at: Time.current, }) end begin CachedMapRegister.insert_all(registrations) if registrations.present? rescue puts '!! Failed to register Georeferences in batch_create_georeference_cached_map_items.' end true end end |
#is_absent ⇒ Boolean?
Returns if True then the corresponding AssertedDistributions have is_absent true.
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# File 'app/models/cached_map_item.rb', line 44 class CachedMapItem < ApplicationRecord include Housekeeping::Projects include Housekeeping::Timestamps include Shared::IsData belongs_to :otu, inverse_of: :cached_map_items belongs_to :geographic_item, inverse_of: :cached_map_items validates_uniqueness_of :otu_id, scope: [:type, :geographic_item_id] validates_presence_of :otu, :geographic_item, :type # @return Hash # {country:, state:, county: } # Check to see if a record is already present rather than-recalculate spatially # CONSIDER: Use Reddis store to cache these results and look them up from there. # def self.cached_map_name_hierarchy(geographic_item_id) h = CachedMapItem .select('level0_geographic_name country, level1_geographic_name state, level2_geographic_name county') .where('level0_geographic_name IS NOT NULL OR level1_geographic_name IS NOT NULL OR level2_geographic_name IS NOT NULL') .find_by(geographic_item_id:) # finds first &.attributes &.compact! return h.symbolize_keys if h.present? GeographicItem.find(geographic_item_id).quick_geographic_name_hierarchy end def self.cached_map_geographic_items_by_otu(otu_scope = nil) return GeographicItem.none if otu_scope.nil? s = 'WITH otu_scope AS (' + otu_scope.all.to_sql + ') ' + ::GeographicItem .joins('JOIN cached_maps on cached_maps.geographic_item_id = geographic_items.id') .joins( 'JOIN otu_scope as otu_scope1 on otu_scope1.id = cached_maps.otu_id').to_sql ::GeographicItem.from('(' + s + ') as geographic_items').distinct end # @return Array def self.types_by_data_origin(data_origin = []) types = [] data_origin.each do |o| CachedMapItem.descendants.each do |d| types.push d.name if d::SOURCE_GAZETEERS.include?(o) end end types.uniq! types end # Check CachedMapItemTranslation for previous translations and use # that if possible def self.translate_by_geographic_item_translation(geographic_item_id, cached_map_type) a = CachedMapItemTranslation.where( cached_map_type:, geographic_item_id: ).pluck(:translated_geographic_item_id) .uniq # Just in case we duplicate the index, hopefully not needed (a.presence || []) end # @return [Array] # Return the geographic_item_id if it is already of the requested origin def self.translate_by_data_origin(geographic_item_id, data_origin) if ::GeographicAreasGeographicItem.where( geographic_item_id:, data_origin: ).any? return [geographic_item_id] else [] end end # @return [Array] # Return the geographic_item_id if it is already used in a CachedMapItem of the right type # !! Probably redundant with translate_by_data_origin !! def self.translate_by_cached_map_usage(geographic_item_id, cached_map_type) if ::CachedMapItem.where(geographic_item_id:, type: cached_map_type).any? return [geographic_item_id] else [] end end def self.translate_by_alternate_shape(geographic_item_id, data_origin) # GeographicItem is an alternate shape to a GeographicArea that *also* has a target gazeteer type if a = GeographicItem.find(geographic_item_id) .geographic_areas .joins(:geographic_items) .where(geographic_areas: { data_origin: }) .order(cached_total_area: :ASC) # smallest first .first &.id return [a] else [] end end # Given a set of target shapes, return those that intersect with the provided shape # # @param geographic_item_id [id] # the shape we are translating *from* # # @param data_origin # defines the shapes we are translating to # # #param buffer [nil, Decimal] in meters # shrink, (or grow) the shape we are translating from # Typical use is to shrink, so that differences in spatial resolution # are minimized (low res shapes intersect with high res in undesireable ways) # # @return [Array] of GeographicItem ids # def self.translate_by_spatial_overlap(geographic_item_id, data_origin, buffer) return [] if geographic_item_id.blank? # !! Assumes all GeographicArea shapes were loaded to multi_polygon # (pre-adapts us to a single geometry field type), however be # aware of this assumption # This is a fast first pass, pure intersection a = GeographicItem .joins(:geographic_areas_geographic_items) .where(geographic_areas_geographic_items: { data_origin: }) .where( "ST_Intersects( multi_polygon, ( select #{ GeographicItem::GEOGRAPHY_SQL } from geographic_items where geographic_items.id = #{geographic_item_id}) )" ) .pluck(:id) return a if buffer.nil? # Refine the pass by smoothing using buffer/st_within return GeographicItem .where(id: a) .where( GeographicItem.st_buffer_st_within(geographic_item_id, 0.0, buffer) ) .pluck(:id) end # @return [Array] # @param origin_type # 'AssertedDistribution' or 'Georeference' # # @param data_origin Array, String # like `ne_states` or ['ne_states, 'ne_countries'] # # @param buffer [nil, Decimal] # shr,ink (or grow) the size of the target shape, in meters # Typical use, do not apply for Georeferences, apply -10km for AssertedDistributions # def self.translate_geographic_item_id(geographic_item_id, origin_type = nil, data_origin = nil, buffer = nil) return nil if data_origin.blank? cached_map_type = types_by_data_origin(data_origin) a = nil b = buffer # All these methods depend on "prior knowledge" (not spatial calculations) if origin_type == 'AssertedDistribution' a = translate_by_geographic_item_translation(geographic_item_id, cached_map_type) return a if a.present? a = translate_by_data_origin(geographic_item_id, data_origin) return a if a.present? a = translate_by_alternate_shape(geographic_item_id, data_origin) return a if a.present? a = translate_by_cached_map_usage(geographic_item_id, cached_map_type) return a if a.present? b = dynamic_buffer(geographic_item_id) # -1000.0 # Monaco end translate_by_spatial_overlap(geographic_item_id, data_origin, b) end def self.dynamic_buffer(geographic_item_id) v = GeographicItem.select(:id, :cached_total_area).find(geographic_item_id).cached_total_area return 0 if v.nil? case Math.log10(v).to_i when 0..2 # 3786 0.0 when 3..6 # Perhaps no GeographicAreas hit here -100.0 when 7 # e.g. Monaco 122 -1000 when 8 -2000 # e.g. Calhoun Co. 27490 when 9 -4000 # 3786 Cooma-Monaro when 10..12 -12000.0 # e.g. Brazil 33794; Canada 37 !! Seems to be a sweet spot, remainder untested else #(max is 13) -20000.0 # Antarctic, 10 end end # @return [Hash, nil] def self.stubs(source_object, cached_map_type) # return nil unless source_object.persisted? o = source_object h = { origin_object: o, cached_map_type:, otu_id: [], geographic_item_id: [], origin_geographic_item_id: nil } geographic_item_id = nil name_hierarchy = nil otu_id = nil base_class_name = o.class.base_class.name case base_class_name when 'AssertedDistribution' geographic_item_id = o.geographic_area.default_geographic_item_id otu_id = [o.otu_id] when 'Georeference' geographic_item_id = o.geographic_item_id otu_id = o.otus.joins('LEFT JOIN taxon_determinations td on otus.id = td.otu_id').where(taxon_determinations: { position: 1 }).distinct.pluck(:id) end # Some AssertedDistribution don't have shapes if geographic_item_id h[:origin_geographic_item_id] = geographic_item_id h[:geographic_item_id] = translate_geographic_item_id( geographic_item_id, base_class_name, cached_map_type.safe_constantize::SOURCE_GAZETEERS ) if h[:geographic_item_id].blank? h[:geographic_item_id] = [geographic_item_id] h[:untranslated] = true end end h[:otu_id] = otu_id h end # Create breadth-first CachedMapItems # Only applicable to Georeferences. # # @params batch_stubs [Hash] # { # map_type: , # geographic_item_id: [] # otu_id: [ [otu_id, :project_id], ... [] ], # georeference_id: [ [geoference_id, :project_id] ], # } # # def self.batch_create_georeference_cached_map_items(batch_stubs) map_type = batch_stubs[:map_type] j = batch_stubs[:geographic_item_id] k = batch_stubs[:otu_id] j.each do |geographic_item_id| k.each do |otu_id| otu_id = otu_id.first project_id = otu_id.second begin a = CachedMapItem.find_or_initialize_by( type: map_type, otu_id:, geographic_item_id:, project_id:, ) if a.persisted? a.increment!(:reference_count) else a.reference_count = 1 a.save! end rescue ActiveRecord::RecordInvalid => e logger.debug e rescue PG::UniqueViolation logger.debug 'pg unique violation' end end end # Register the Georeferences registrations = [] batch_stubs[:georeference_id].each do |georeference_id, project_id| registrations.push({ cached_map_register_object_type: 'Georeference', cached_map_register_object_id: georeference_id, project_id:, created_at: Time.current, updated_at: Time.current, }) end begin CachedMapRegister.insert_all(registrations) if registrations.present? rescue puts '!! Failed to register Georeferences in batch_create_georeference_cached_map_items.' end true end end |
#level0_geographic_name ⇒ String?
Returns the level 0 name.
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# File 'app/models/cached_map_item.rb', line 44 class CachedMapItem < ApplicationRecord include Housekeeping::Projects include Housekeeping::Timestamps include Shared::IsData belongs_to :otu, inverse_of: :cached_map_items belongs_to :geographic_item, inverse_of: :cached_map_items validates_uniqueness_of :otu_id, scope: [:type, :geographic_item_id] validates_presence_of :otu, :geographic_item, :type # @return Hash # {country:, state:, county: } # Check to see if a record is already present rather than-recalculate spatially # CONSIDER: Use Reddis store to cache these results and look them up from there. # def self.cached_map_name_hierarchy(geographic_item_id) h = CachedMapItem .select('level0_geographic_name country, level1_geographic_name state, level2_geographic_name county') .where('level0_geographic_name IS NOT NULL OR level1_geographic_name IS NOT NULL OR level2_geographic_name IS NOT NULL') .find_by(geographic_item_id:) # finds first &.attributes &.compact! return h.symbolize_keys if h.present? GeographicItem.find(geographic_item_id).quick_geographic_name_hierarchy end def self.cached_map_geographic_items_by_otu(otu_scope = nil) return GeographicItem.none if otu_scope.nil? s = 'WITH otu_scope AS (' + otu_scope.all.to_sql + ') ' + ::GeographicItem .joins('JOIN cached_maps on cached_maps.geographic_item_id = geographic_items.id') .joins( 'JOIN otu_scope as otu_scope1 on otu_scope1.id = cached_maps.otu_id').to_sql ::GeographicItem.from('(' + s + ') as geographic_items').distinct end # @return Array def self.types_by_data_origin(data_origin = []) types = [] data_origin.each do |o| CachedMapItem.descendants.each do |d| types.push d.name if d::SOURCE_GAZETEERS.include?(o) end end types.uniq! types end # Check CachedMapItemTranslation for previous translations and use # that if possible def self.translate_by_geographic_item_translation(geographic_item_id, cached_map_type) a = CachedMapItemTranslation.where( cached_map_type:, geographic_item_id: ).pluck(:translated_geographic_item_id) .uniq # Just in case we duplicate the index, hopefully not needed (a.presence || []) end # @return [Array] # Return the geographic_item_id if it is already of the requested origin def self.translate_by_data_origin(geographic_item_id, data_origin) if ::GeographicAreasGeographicItem.where( geographic_item_id:, data_origin: ).any? return [geographic_item_id] else [] end end # @return [Array] # Return the geographic_item_id if it is already used in a CachedMapItem of the right type # !! Probably redundant with translate_by_data_origin !! def self.translate_by_cached_map_usage(geographic_item_id, cached_map_type) if ::CachedMapItem.where(geographic_item_id:, type: cached_map_type).any? return [geographic_item_id] else [] end end def self.translate_by_alternate_shape(geographic_item_id, data_origin) # GeographicItem is an alternate shape to a GeographicArea that *also* has a target gazeteer type if a = GeographicItem.find(geographic_item_id) .geographic_areas .joins(:geographic_items) .where(geographic_areas: { data_origin: }) .order(cached_total_area: :ASC) # smallest first .first &.id return [a] else [] end end # Given a set of target shapes, return those that intersect with the provided shape # # @param geographic_item_id [id] # the shape we are translating *from* # # @param data_origin # defines the shapes we are translating to # # #param buffer [nil, Decimal] in meters # shrink, (or grow) the shape we are translating from # Typical use is to shrink, so that differences in spatial resolution # are minimized (low res shapes intersect with high res in undesireable ways) # # @return [Array] of GeographicItem ids # def self.translate_by_spatial_overlap(geographic_item_id, data_origin, buffer) return [] if geographic_item_id.blank? # !! Assumes all GeographicArea shapes were loaded to multi_polygon # (pre-adapts us to a single geometry field type), however be # aware of this assumption # This is a fast first pass, pure intersection a = GeographicItem .joins(:geographic_areas_geographic_items) .where(geographic_areas_geographic_items: { data_origin: }) .where( "ST_Intersects( multi_polygon, ( select #{ GeographicItem::GEOGRAPHY_SQL } from geographic_items where geographic_items.id = #{geographic_item_id}) )" ) .pluck(:id) return a if buffer.nil? # Refine the pass by smoothing using buffer/st_within return GeographicItem .where(id: a) .where( GeographicItem.st_buffer_st_within(geographic_item_id, 0.0, buffer) ) .pluck(:id) end # @return [Array] # @param origin_type # 'AssertedDistribution' or 'Georeference' # # @param data_origin Array, String # like `ne_states` or ['ne_states, 'ne_countries'] # # @param buffer [nil, Decimal] # shr,ink (or grow) the size of the target shape, in meters # Typical use, do not apply for Georeferences, apply -10km for AssertedDistributions # def self.translate_geographic_item_id(geographic_item_id, origin_type = nil, data_origin = nil, buffer = nil) return nil if data_origin.blank? cached_map_type = types_by_data_origin(data_origin) a = nil b = buffer # All these methods depend on "prior knowledge" (not spatial calculations) if origin_type == 'AssertedDistribution' a = translate_by_geographic_item_translation(geographic_item_id, cached_map_type) return a if a.present? a = translate_by_data_origin(geographic_item_id, data_origin) return a if a.present? a = translate_by_alternate_shape(geographic_item_id, data_origin) return a if a.present? a = translate_by_cached_map_usage(geographic_item_id, cached_map_type) return a if a.present? b = dynamic_buffer(geographic_item_id) # -1000.0 # Monaco end translate_by_spatial_overlap(geographic_item_id, data_origin, b) end def self.dynamic_buffer(geographic_item_id) v = GeographicItem.select(:id, :cached_total_area).find(geographic_item_id).cached_total_area return 0 if v.nil? case Math.log10(v).to_i when 0..2 # 3786 0.0 when 3..6 # Perhaps no GeographicAreas hit here -100.0 when 7 # e.g. Monaco 122 -1000 when 8 -2000 # e.g. Calhoun Co. 27490 when 9 -4000 # 3786 Cooma-Monaro when 10..12 -12000.0 # e.g. Brazil 33794; Canada 37 !! Seems to be a sweet spot, remainder untested else #(max is 13) -20000.0 # Antarctic, 10 end end # @return [Hash, nil] def self.stubs(source_object, cached_map_type) # return nil unless source_object.persisted? o = source_object h = { origin_object: o, cached_map_type:, otu_id: [], geographic_item_id: [], origin_geographic_item_id: nil } geographic_item_id = nil name_hierarchy = nil otu_id = nil base_class_name = o.class.base_class.name case base_class_name when 'AssertedDistribution' geographic_item_id = o.geographic_area.default_geographic_item_id otu_id = [o.otu_id] when 'Georeference' geographic_item_id = o.geographic_item_id otu_id = o.otus.joins('LEFT JOIN taxon_determinations td on otus.id = td.otu_id').where(taxon_determinations: { position: 1 }).distinct.pluck(:id) end # Some AssertedDistribution don't have shapes if geographic_item_id h[:origin_geographic_item_id] = geographic_item_id h[:geographic_item_id] = translate_geographic_item_id( geographic_item_id, base_class_name, cached_map_type.safe_constantize::SOURCE_GAZETEERS ) if h[:geographic_item_id].blank? h[:geographic_item_id] = [geographic_item_id] h[:untranslated] = true end end h[:otu_id] = otu_id h end # Create breadth-first CachedMapItems # Only applicable to Georeferences. # # @params batch_stubs [Hash] # { # map_type: , # geographic_item_id: [] # otu_id: [ [otu_id, :project_id], ... [] ], # georeference_id: [ [geoference_id, :project_id] ], # } # # def self.batch_create_georeference_cached_map_items(batch_stubs) map_type = batch_stubs[:map_type] j = batch_stubs[:geographic_item_id] k = batch_stubs[:otu_id] j.each do |geographic_item_id| k.each do |otu_id| otu_id = otu_id.first project_id = otu_id.second begin a = CachedMapItem.find_or_initialize_by( type: map_type, otu_id:, geographic_item_id:, project_id:, ) if a.persisted? a.increment!(:reference_count) else a.reference_count = 1 a.save! end rescue ActiveRecord::RecordInvalid => e logger.debug e rescue PG::UniqueViolation logger.debug 'pg unique violation' end end end # Register the Georeferences registrations = [] batch_stubs[:georeference_id].each do |georeference_id, project_id| registrations.push({ cached_map_register_object_type: 'Georeference', cached_map_register_object_id: georeference_id, project_id:, created_at: Time.current, updated_at: Time.current, }) end begin CachedMapRegister.insert_all(registrations) if registrations.present? rescue puts '!! Failed to register Georeferences in batch_create_georeference_cached_map_items.' end true end end |
#level1_geographic_name ⇒ String?
Returns the level 1 name.
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# File 'app/models/cached_map_item.rb', line 44 class CachedMapItem < ApplicationRecord include Housekeeping::Projects include Housekeeping::Timestamps include Shared::IsData belongs_to :otu, inverse_of: :cached_map_items belongs_to :geographic_item, inverse_of: :cached_map_items validates_uniqueness_of :otu_id, scope: [:type, :geographic_item_id] validates_presence_of :otu, :geographic_item, :type # @return Hash # {country:, state:, county: } # Check to see if a record is already present rather than-recalculate spatially # CONSIDER: Use Reddis store to cache these results and look them up from there. # def self.cached_map_name_hierarchy(geographic_item_id) h = CachedMapItem .select('level0_geographic_name country, level1_geographic_name state, level2_geographic_name county') .where('level0_geographic_name IS NOT NULL OR level1_geographic_name IS NOT NULL OR level2_geographic_name IS NOT NULL') .find_by(geographic_item_id:) # finds first &.attributes &.compact! return h.symbolize_keys if h.present? GeographicItem.find(geographic_item_id).quick_geographic_name_hierarchy end def self.cached_map_geographic_items_by_otu(otu_scope = nil) return GeographicItem.none if otu_scope.nil? s = 'WITH otu_scope AS (' + otu_scope.all.to_sql + ') ' + ::GeographicItem .joins('JOIN cached_maps on cached_maps.geographic_item_id = geographic_items.id') .joins( 'JOIN otu_scope as otu_scope1 on otu_scope1.id = cached_maps.otu_id').to_sql ::GeographicItem.from('(' + s + ') as geographic_items').distinct end # @return Array def self.types_by_data_origin(data_origin = []) types = [] data_origin.each do |o| CachedMapItem.descendants.each do |d| types.push d.name if d::SOURCE_GAZETEERS.include?(o) end end types.uniq! types end # Check CachedMapItemTranslation for previous translations and use # that if possible def self.translate_by_geographic_item_translation(geographic_item_id, cached_map_type) a = CachedMapItemTranslation.where( cached_map_type:, geographic_item_id: ).pluck(:translated_geographic_item_id) .uniq # Just in case we duplicate the index, hopefully not needed (a.presence || []) end # @return [Array] # Return the geographic_item_id if it is already of the requested origin def self.translate_by_data_origin(geographic_item_id, data_origin) if ::GeographicAreasGeographicItem.where( geographic_item_id:, data_origin: ).any? return [geographic_item_id] else [] end end # @return [Array] # Return the geographic_item_id if it is already used in a CachedMapItem of the right type # !! Probably redundant with translate_by_data_origin !! def self.translate_by_cached_map_usage(geographic_item_id, cached_map_type) if ::CachedMapItem.where(geographic_item_id:, type: cached_map_type).any? return [geographic_item_id] else [] end end def self.translate_by_alternate_shape(geographic_item_id, data_origin) # GeographicItem is an alternate shape to a GeographicArea that *also* has a target gazeteer type if a = GeographicItem.find(geographic_item_id) .geographic_areas .joins(:geographic_items) .where(geographic_areas: { data_origin: }) .order(cached_total_area: :ASC) # smallest first .first &.id return [a] else [] end end # Given a set of target shapes, return those that intersect with the provided shape # # @param geographic_item_id [id] # the shape we are translating *from* # # @param data_origin # defines the shapes we are translating to # # #param buffer [nil, Decimal] in meters # shrink, (or grow) the shape we are translating from # Typical use is to shrink, so that differences in spatial resolution # are minimized (low res shapes intersect with high res in undesireable ways) # # @return [Array] of GeographicItem ids # def self.translate_by_spatial_overlap(geographic_item_id, data_origin, buffer) return [] if geographic_item_id.blank? # !! Assumes all GeographicArea shapes were loaded to multi_polygon # (pre-adapts us to a single geometry field type), however be # aware of this assumption # This is a fast first pass, pure intersection a = GeographicItem .joins(:geographic_areas_geographic_items) .where(geographic_areas_geographic_items: { data_origin: }) .where( "ST_Intersects( multi_polygon, ( select #{ GeographicItem::GEOGRAPHY_SQL } from geographic_items where geographic_items.id = #{geographic_item_id}) )" ) .pluck(:id) return a if buffer.nil? # Refine the pass by smoothing using buffer/st_within return GeographicItem .where(id: a) .where( GeographicItem.st_buffer_st_within(geographic_item_id, 0.0, buffer) ) .pluck(:id) end # @return [Array] # @param origin_type # 'AssertedDistribution' or 'Georeference' # # @param data_origin Array, String # like `ne_states` or ['ne_states, 'ne_countries'] # # @param buffer [nil, Decimal] # shr,ink (or grow) the size of the target shape, in meters # Typical use, do not apply for Georeferences, apply -10km for AssertedDistributions # def self.translate_geographic_item_id(geographic_item_id, origin_type = nil, data_origin = nil, buffer = nil) return nil if data_origin.blank? cached_map_type = types_by_data_origin(data_origin) a = nil b = buffer # All these methods depend on "prior knowledge" (not spatial calculations) if origin_type == 'AssertedDistribution' a = translate_by_geographic_item_translation(geographic_item_id, cached_map_type) return a if a.present? a = translate_by_data_origin(geographic_item_id, data_origin) return a if a.present? a = translate_by_alternate_shape(geographic_item_id, data_origin) return a if a.present? a = translate_by_cached_map_usage(geographic_item_id, cached_map_type) return a if a.present? b = dynamic_buffer(geographic_item_id) # -1000.0 # Monaco end translate_by_spatial_overlap(geographic_item_id, data_origin, b) end def self.dynamic_buffer(geographic_item_id) v = GeographicItem.select(:id, :cached_total_area).find(geographic_item_id).cached_total_area return 0 if v.nil? case Math.log10(v).to_i when 0..2 # 3786 0.0 when 3..6 # Perhaps no GeographicAreas hit here -100.0 when 7 # e.g. Monaco 122 -1000 when 8 -2000 # e.g. Calhoun Co. 27490 when 9 -4000 # 3786 Cooma-Monaro when 10..12 -12000.0 # e.g. Brazil 33794; Canada 37 !! Seems to be a sweet spot, remainder untested else #(max is 13) -20000.0 # Antarctic, 10 end end # @return [Hash, nil] def self.stubs(source_object, cached_map_type) # return nil unless source_object.persisted? o = source_object h = { origin_object: o, cached_map_type:, otu_id: [], geographic_item_id: [], origin_geographic_item_id: nil } geographic_item_id = nil name_hierarchy = nil otu_id = nil base_class_name = o.class.base_class.name case base_class_name when 'AssertedDistribution' geographic_item_id = o.geographic_area.default_geographic_item_id otu_id = [o.otu_id] when 'Georeference' geographic_item_id = o.geographic_item_id otu_id = o.otus.joins('LEFT JOIN taxon_determinations td on otus.id = td.otu_id').where(taxon_determinations: { position: 1 }).distinct.pluck(:id) end # Some AssertedDistribution don't have shapes if geographic_item_id h[:origin_geographic_item_id] = geographic_item_id h[:geographic_item_id] = translate_geographic_item_id( geographic_item_id, base_class_name, cached_map_type.safe_constantize::SOURCE_GAZETEERS ) if h[:geographic_item_id].blank? h[:geographic_item_id] = [geographic_item_id] h[:untranslated] = true end end h[:otu_id] = otu_id h end # Create breadth-first CachedMapItems # Only applicable to Georeferences. # # @params batch_stubs [Hash] # { # map_type: , # geographic_item_id: [] # otu_id: [ [otu_id, :project_id], ... [] ], # georeference_id: [ [geoference_id, :project_id] ], # } # # def self.batch_create_georeference_cached_map_items(batch_stubs) map_type = batch_stubs[:map_type] j = batch_stubs[:geographic_item_id] k = batch_stubs[:otu_id] j.each do |geographic_item_id| k.each do |otu_id| otu_id = otu_id.first project_id = otu_id.second begin a = CachedMapItem.find_or_initialize_by( type: map_type, otu_id:, geographic_item_id:, project_id:, ) if a.persisted? a.increment!(:reference_count) else a.reference_count = 1 a.save! end rescue ActiveRecord::RecordInvalid => e logger.debug e rescue PG::UniqueViolation logger.debug 'pg unique violation' end end end # Register the Georeferences registrations = [] batch_stubs[:georeference_id].each do |georeference_id, project_id| registrations.push({ cached_map_register_object_type: 'Georeference', cached_map_register_object_id: georeference_id, project_id:, created_at: Time.current, updated_at: Time.current, }) end begin CachedMapRegister.insert_all(registrations) if registrations.present? rescue puts '!! Failed to register Georeferences in batch_create_georeference_cached_map_items.' end true end end |
#level2_geographic_name ⇒ String?
Returns the level 2 name. !! Not presently used. !!.
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# File 'app/models/cached_map_item.rb', line 44 class CachedMapItem < ApplicationRecord include Housekeeping::Projects include Housekeeping::Timestamps include Shared::IsData belongs_to :otu, inverse_of: :cached_map_items belongs_to :geographic_item, inverse_of: :cached_map_items validates_uniqueness_of :otu_id, scope: [:type, :geographic_item_id] validates_presence_of :otu, :geographic_item, :type # @return Hash # {country:, state:, county: } # Check to see if a record is already present rather than-recalculate spatially # CONSIDER: Use Reddis store to cache these results and look them up from there. # def self.cached_map_name_hierarchy(geographic_item_id) h = CachedMapItem .select('level0_geographic_name country, level1_geographic_name state, level2_geographic_name county') .where('level0_geographic_name IS NOT NULL OR level1_geographic_name IS NOT NULL OR level2_geographic_name IS NOT NULL') .find_by(geographic_item_id:) # finds first &.attributes &.compact! return h.symbolize_keys if h.present? GeographicItem.find(geographic_item_id).quick_geographic_name_hierarchy end def self.cached_map_geographic_items_by_otu(otu_scope = nil) return GeographicItem.none if otu_scope.nil? s = 'WITH otu_scope AS (' + otu_scope.all.to_sql + ') ' + ::GeographicItem .joins('JOIN cached_maps on cached_maps.geographic_item_id = geographic_items.id') .joins( 'JOIN otu_scope as otu_scope1 on otu_scope1.id = cached_maps.otu_id').to_sql ::GeographicItem.from('(' + s + ') as geographic_items').distinct end # @return Array def self.types_by_data_origin(data_origin = []) types = [] data_origin.each do |o| CachedMapItem.descendants.each do |d| types.push d.name if d::SOURCE_GAZETEERS.include?(o) end end types.uniq! types end # Check CachedMapItemTranslation for previous translations and use # that if possible def self.translate_by_geographic_item_translation(geographic_item_id, cached_map_type) a = CachedMapItemTranslation.where( cached_map_type:, geographic_item_id: ).pluck(:translated_geographic_item_id) .uniq # Just in case we duplicate the index, hopefully not needed (a.presence || []) end # @return [Array] # Return the geographic_item_id if it is already of the requested origin def self.translate_by_data_origin(geographic_item_id, data_origin) if ::GeographicAreasGeographicItem.where( geographic_item_id:, data_origin: ).any? return [geographic_item_id] else [] end end # @return [Array] # Return the geographic_item_id if it is already used in a CachedMapItem of the right type # !! Probably redundant with translate_by_data_origin !! def self.translate_by_cached_map_usage(geographic_item_id, cached_map_type) if ::CachedMapItem.where(geographic_item_id:, type: cached_map_type).any? return [geographic_item_id] else [] end end def self.translate_by_alternate_shape(geographic_item_id, data_origin) # GeographicItem is an alternate shape to a GeographicArea that *also* has a target gazeteer type if a = GeographicItem.find(geographic_item_id) .geographic_areas .joins(:geographic_items) .where(geographic_areas: { data_origin: }) .order(cached_total_area: :ASC) # smallest first .first &.id return [a] else [] end end # Given a set of target shapes, return those that intersect with the provided shape # # @param geographic_item_id [id] # the shape we are translating *from* # # @param data_origin # defines the shapes we are translating to # # #param buffer [nil, Decimal] in meters # shrink, (or grow) the shape we are translating from # Typical use is to shrink, so that differences in spatial resolution # are minimized (low res shapes intersect with high res in undesireable ways) # # @return [Array] of GeographicItem ids # def self.translate_by_spatial_overlap(geographic_item_id, data_origin, buffer) return [] if geographic_item_id.blank? # !! Assumes all GeographicArea shapes were loaded to multi_polygon # (pre-adapts us to a single geometry field type), however be # aware of this assumption # This is a fast first pass, pure intersection a = GeographicItem .joins(:geographic_areas_geographic_items) .where(geographic_areas_geographic_items: { data_origin: }) .where( "ST_Intersects( multi_polygon, ( select #{ GeographicItem::GEOGRAPHY_SQL } from geographic_items where geographic_items.id = #{geographic_item_id}) )" ) .pluck(:id) return a if buffer.nil? # Refine the pass by smoothing using buffer/st_within return GeographicItem .where(id: a) .where( GeographicItem.st_buffer_st_within(geographic_item_id, 0.0, buffer) ) .pluck(:id) end # @return [Array] # @param origin_type # 'AssertedDistribution' or 'Georeference' # # @param data_origin Array, String # like `ne_states` or ['ne_states, 'ne_countries'] # # @param buffer [nil, Decimal] # shr,ink (or grow) the size of the target shape, in meters # Typical use, do not apply for Georeferences, apply -10km for AssertedDistributions # def self.translate_geographic_item_id(geographic_item_id, origin_type = nil, data_origin = nil, buffer = nil) return nil if data_origin.blank? cached_map_type = types_by_data_origin(data_origin) a = nil b = buffer # All these methods depend on "prior knowledge" (not spatial calculations) if origin_type == 'AssertedDistribution' a = translate_by_geographic_item_translation(geographic_item_id, cached_map_type) return a if a.present? a = translate_by_data_origin(geographic_item_id, data_origin) return a if a.present? a = translate_by_alternate_shape(geographic_item_id, data_origin) return a if a.present? a = translate_by_cached_map_usage(geographic_item_id, cached_map_type) return a if a.present? b = dynamic_buffer(geographic_item_id) # -1000.0 # Monaco end translate_by_spatial_overlap(geographic_item_id, data_origin, b) end def self.dynamic_buffer(geographic_item_id) v = GeographicItem.select(:id, :cached_total_area).find(geographic_item_id).cached_total_area return 0 if v.nil? case Math.log10(v).to_i when 0..2 # 3786 0.0 when 3..6 # Perhaps no GeographicAreas hit here -100.0 when 7 # e.g. Monaco 122 -1000 when 8 -2000 # e.g. Calhoun Co. 27490 when 9 -4000 # 3786 Cooma-Monaro when 10..12 -12000.0 # e.g. Brazil 33794; Canada 37 !! Seems to be a sweet spot, remainder untested else #(max is 13) -20000.0 # Antarctic, 10 end end # @return [Hash, nil] def self.stubs(source_object, cached_map_type) # return nil unless source_object.persisted? o = source_object h = { origin_object: o, cached_map_type:, otu_id: [], geographic_item_id: [], origin_geographic_item_id: nil } geographic_item_id = nil name_hierarchy = nil otu_id = nil base_class_name = o.class.base_class.name case base_class_name when 'AssertedDistribution' geographic_item_id = o.geographic_area.default_geographic_item_id otu_id = [o.otu_id] when 'Georeference' geographic_item_id = o.geographic_item_id otu_id = o.otus.joins('LEFT JOIN taxon_determinations td on otus.id = td.otu_id').where(taxon_determinations: { position: 1 }).distinct.pluck(:id) end # Some AssertedDistribution don't have shapes if geographic_item_id h[:origin_geographic_item_id] = geographic_item_id h[:geographic_item_id] = translate_geographic_item_id( geographic_item_id, base_class_name, cached_map_type.safe_constantize::SOURCE_GAZETEERS ) if h[:geographic_item_id].blank? h[:geographic_item_id] = [geographic_item_id] h[:untranslated] = true end end h[:otu_id] = otu_id h end # Create breadth-first CachedMapItems # Only applicable to Georeferences. # # @params batch_stubs [Hash] # { # map_type: , # geographic_item_id: [] # otu_id: [ [otu_id, :project_id], ... [] ], # georeference_id: [ [geoference_id, :project_id] ], # } # # def self.batch_create_georeference_cached_map_items(batch_stubs) map_type = batch_stubs[:map_type] j = batch_stubs[:geographic_item_id] k = batch_stubs[:otu_id] j.each do |geographic_item_id| k.each do |otu_id| otu_id = otu_id.first project_id = otu_id.second begin a = CachedMapItem.find_or_initialize_by( type: map_type, otu_id:, geographic_item_id:, project_id:, ) if a.persisted? a.increment!(:reference_count) else a.reference_count = 1 a.save! end rescue ActiveRecord::RecordInvalid => e logger.debug e rescue PG::UniqueViolation logger.debug 'pg unique violation' end end end # Register the Georeferences registrations = [] batch_stubs[:georeference_id].each do |georeference_id, project_id| registrations.push({ cached_map_register_object_type: 'Georeference', cached_map_register_object_id: georeference_id, project_id:, created_at: Time.current, updated_at: Time.current, }) end begin CachedMapRegister.insert_all(registrations) if registrations.present? rescue puts '!! Failed to register Georeferences in batch_create_georeference_cached_map_items.' end true end end |
#otu_id ⇒ Otu#id
Returns , the id of OTU, required.
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# File 'app/models/cached_map_item.rb', line 44 class CachedMapItem < ApplicationRecord include Housekeeping::Projects include Housekeeping::Timestamps include Shared::IsData belongs_to :otu, inverse_of: :cached_map_items belongs_to :geographic_item, inverse_of: :cached_map_items validates_uniqueness_of :otu_id, scope: [:type, :geographic_item_id] validates_presence_of :otu, :geographic_item, :type # @return Hash # {country:, state:, county: } # Check to see if a record is already present rather than-recalculate spatially # CONSIDER: Use Reddis store to cache these results and look them up from there. # def self.cached_map_name_hierarchy(geographic_item_id) h = CachedMapItem .select('level0_geographic_name country, level1_geographic_name state, level2_geographic_name county') .where('level0_geographic_name IS NOT NULL OR level1_geographic_name IS NOT NULL OR level2_geographic_name IS NOT NULL') .find_by(geographic_item_id:) # finds first &.attributes &.compact! return h.symbolize_keys if h.present? GeographicItem.find(geographic_item_id).quick_geographic_name_hierarchy end def self.cached_map_geographic_items_by_otu(otu_scope = nil) return GeographicItem.none if otu_scope.nil? s = 'WITH otu_scope AS (' + otu_scope.all.to_sql + ') ' + ::GeographicItem .joins('JOIN cached_maps on cached_maps.geographic_item_id = geographic_items.id') .joins( 'JOIN otu_scope as otu_scope1 on otu_scope1.id = cached_maps.otu_id').to_sql ::GeographicItem.from('(' + s + ') as geographic_items').distinct end # @return Array def self.types_by_data_origin(data_origin = []) types = [] data_origin.each do |o| CachedMapItem.descendants.each do |d| types.push d.name if d::SOURCE_GAZETEERS.include?(o) end end types.uniq! types end # Check CachedMapItemTranslation for previous translations and use # that if possible def self.translate_by_geographic_item_translation(geographic_item_id, cached_map_type) a = CachedMapItemTranslation.where( cached_map_type:, geographic_item_id: ).pluck(:translated_geographic_item_id) .uniq # Just in case we duplicate the index, hopefully not needed (a.presence || []) end # @return [Array] # Return the geographic_item_id if it is already of the requested origin def self.translate_by_data_origin(geographic_item_id, data_origin) if ::GeographicAreasGeographicItem.where( geographic_item_id:, data_origin: ).any? return [geographic_item_id] else [] end end # @return [Array] # Return the geographic_item_id if it is already used in a CachedMapItem of the right type # !! Probably redundant with translate_by_data_origin !! def self.translate_by_cached_map_usage(geographic_item_id, cached_map_type) if ::CachedMapItem.where(geographic_item_id:, type: cached_map_type).any? return [geographic_item_id] else [] end end def self.translate_by_alternate_shape(geographic_item_id, data_origin) # GeographicItem is an alternate shape to a GeographicArea that *also* has a target gazeteer type if a = GeographicItem.find(geographic_item_id) .geographic_areas .joins(:geographic_items) .where(geographic_areas: { data_origin: }) .order(cached_total_area: :ASC) # smallest first .first &.id return [a] else [] end end # Given a set of target shapes, return those that intersect with the provided shape # # @param geographic_item_id [id] # the shape we are translating *from* # # @param data_origin # defines the shapes we are translating to # # #param buffer [nil, Decimal] in meters # shrink, (or grow) the shape we are translating from # Typical use is to shrink, so that differences in spatial resolution # are minimized (low res shapes intersect with high res in undesireable ways) # # @return [Array] of GeographicItem ids # def self.translate_by_spatial_overlap(geographic_item_id, data_origin, buffer) return [] if geographic_item_id.blank? # !! Assumes all GeographicArea shapes were loaded to multi_polygon # (pre-adapts us to a single geometry field type), however be # aware of this assumption # This is a fast first pass, pure intersection a = GeographicItem .joins(:geographic_areas_geographic_items) .where(geographic_areas_geographic_items: { data_origin: }) .where( "ST_Intersects( multi_polygon, ( select #{ GeographicItem::GEOGRAPHY_SQL } from geographic_items where geographic_items.id = #{geographic_item_id}) )" ) .pluck(:id) return a if buffer.nil? # Refine the pass by smoothing using buffer/st_within return GeographicItem .where(id: a) .where( GeographicItem.st_buffer_st_within(geographic_item_id, 0.0, buffer) ) .pluck(:id) end # @return [Array] # @param origin_type # 'AssertedDistribution' or 'Georeference' # # @param data_origin Array, String # like `ne_states` or ['ne_states, 'ne_countries'] # # @param buffer [nil, Decimal] # shr,ink (or grow) the size of the target shape, in meters # Typical use, do not apply for Georeferences, apply -10km for AssertedDistributions # def self.translate_geographic_item_id(geographic_item_id, origin_type = nil, data_origin = nil, buffer = nil) return nil if data_origin.blank? cached_map_type = types_by_data_origin(data_origin) a = nil b = buffer # All these methods depend on "prior knowledge" (not spatial calculations) if origin_type == 'AssertedDistribution' a = translate_by_geographic_item_translation(geographic_item_id, cached_map_type) return a if a.present? a = translate_by_data_origin(geographic_item_id, data_origin) return a if a.present? a = translate_by_alternate_shape(geographic_item_id, data_origin) return a if a.present? a = translate_by_cached_map_usage(geographic_item_id, cached_map_type) return a if a.present? b = dynamic_buffer(geographic_item_id) # -1000.0 # Monaco end translate_by_spatial_overlap(geographic_item_id, data_origin, b) end def self.dynamic_buffer(geographic_item_id) v = GeographicItem.select(:id, :cached_total_area).find(geographic_item_id).cached_total_area return 0 if v.nil? case Math.log10(v).to_i when 0..2 # 3786 0.0 when 3..6 # Perhaps no GeographicAreas hit here -100.0 when 7 # e.g. Monaco 122 -1000 when 8 -2000 # e.g. Calhoun Co. 27490 when 9 -4000 # 3786 Cooma-Monaro when 10..12 -12000.0 # e.g. Brazil 33794; Canada 37 !! Seems to be a sweet spot, remainder untested else #(max is 13) -20000.0 # Antarctic, 10 end end # @return [Hash, nil] def self.stubs(source_object, cached_map_type) # return nil unless source_object.persisted? o = source_object h = { origin_object: o, cached_map_type:, otu_id: [], geographic_item_id: [], origin_geographic_item_id: nil } geographic_item_id = nil name_hierarchy = nil otu_id = nil base_class_name = o.class.base_class.name case base_class_name when 'AssertedDistribution' geographic_item_id = o.geographic_area.default_geographic_item_id otu_id = [o.otu_id] when 'Georeference' geographic_item_id = o.geographic_item_id otu_id = o.otus.joins('LEFT JOIN taxon_determinations td on otus.id = td.otu_id').where(taxon_determinations: { position: 1 }).distinct.pluck(:id) end # Some AssertedDistribution don't have shapes if geographic_item_id h[:origin_geographic_item_id] = geographic_item_id h[:geographic_item_id] = translate_geographic_item_id( geographic_item_id, base_class_name, cached_map_type.safe_constantize::SOURCE_GAZETEERS ) if h[:geographic_item_id].blank? h[:geographic_item_id] = [geographic_item_id] h[:untranslated] = true end end h[:otu_id] = otu_id h end # Create breadth-first CachedMapItems # Only applicable to Georeferences. # # @params batch_stubs [Hash] # { # map_type: , # geographic_item_id: [] # otu_id: [ [otu_id, :project_id], ... [] ], # georeference_id: [ [geoference_id, :project_id] ], # } # # def self.batch_create_georeference_cached_map_items(batch_stubs) map_type = batch_stubs[:map_type] j = batch_stubs[:geographic_item_id] k = batch_stubs[:otu_id] j.each do |geographic_item_id| k.each do |otu_id| otu_id = otu_id.first project_id = otu_id.second begin a = CachedMapItem.find_or_initialize_by( type: map_type, otu_id:, geographic_item_id:, project_id:, ) if a.persisted? a.increment!(:reference_count) else a.reference_count = 1 a.save! end rescue ActiveRecord::RecordInvalid => e logger.debug e rescue PG::UniqueViolation logger.debug 'pg unique violation' end end end # Register the Georeferences registrations = [] batch_stubs[:georeference_id].each do |georeference_id, project_id| registrations.push({ cached_map_register_object_type: 'Georeference', cached_map_register_object_id: georeference_id, project_id:, created_at: Time.current, updated_at: Time.current, }) end begin CachedMapRegister.insert_all(registrations) if registrations.present? rescue puts '!! Failed to register Georeferences in batch_create_georeference_cached_map_items.' end true end end |
#reference_count ⇒ Integer
reference this OTU/shape combination. . . . .
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# File 'app/models/cached_map_item.rb', line 44 class CachedMapItem < ApplicationRecord include Housekeeping::Projects include Housekeeping::Timestamps include Shared::IsData belongs_to :otu, inverse_of: :cached_map_items belongs_to :geographic_item, inverse_of: :cached_map_items validates_uniqueness_of :otu_id, scope: [:type, :geographic_item_id] validates_presence_of :otu, :geographic_item, :type # @return Hash # {country:, state:, county: } # Check to see if a record is already present rather than-recalculate spatially # CONSIDER: Use Reddis store to cache these results and look them up from there. # def self.cached_map_name_hierarchy(geographic_item_id) h = CachedMapItem .select('level0_geographic_name country, level1_geographic_name state, level2_geographic_name county') .where('level0_geographic_name IS NOT NULL OR level1_geographic_name IS NOT NULL OR level2_geographic_name IS NOT NULL') .find_by(geographic_item_id:) # finds first &.attributes &.compact! return h.symbolize_keys if h.present? GeographicItem.find(geographic_item_id).quick_geographic_name_hierarchy end def self.cached_map_geographic_items_by_otu(otu_scope = nil) return GeographicItem.none if otu_scope.nil? s = 'WITH otu_scope AS (' + otu_scope.all.to_sql + ') ' + ::GeographicItem .joins('JOIN cached_maps on cached_maps.geographic_item_id = geographic_items.id') .joins( 'JOIN otu_scope as otu_scope1 on otu_scope1.id = cached_maps.otu_id').to_sql ::GeographicItem.from('(' + s + ') as geographic_items').distinct end # @return Array def self.types_by_data_origin(data_origin = []) types = [] data_origin.each do |o| CachedMapItem.descendants.each do |d| types.push d.name if d::SOURCE_GAZETEERS.include?(o) end end types.uniq! types end # Check CachedMapItemTranslation for previous translations and use # that if possible def self.translate_by_geographic_item_translation(geographic_item_id, cached_map_type) a = CachedMapItemTranslation.where( cached_map_type:, geographic_item_id: ).pluck(:translated_geographic_item_id) .uniq # Just in case we duplicate the index, hopefully not needed (a.presence || []) end # @return [Array] # Return the geographic_item_id if it is already of the requested origin def self.translate_by_data_origin(geographic_item_id, data_origin) if ::GeographicAreasGeographicItem.where( geographic_item_id:, data_origin: ).any? return [geographic_item_id] else [] end end # @return [Array] # Return the geographic_item_id if it is already used in a CachedMapItem of the right type # !! Probably redundant with translate_by_data_origin !! def self.translate_by_cached_map_usage(geographic_item_id, cached_map_type) if ::CachedMapItem.where(geographic_item_id:, type: cached_map_type).any? return [geographic_item_id] else [] end end def self.translate_by_alternate_shape(geographic_item_id, data_origin) # GeographicItem is an alternate shape to a GeographicArea that *also* has a target gazeteer type if a = GeographicItem.find(geographic_item_id) .geographic_areas .joins(:geographic_items) .where(geographic_areas: { data_origin: }) .order(cached_total_area: :ASC) # smallest first .first &.id return [a] else [] end end # Given a set of target shapes, return those that intersect with the provided shape # # @param geographic_item_id [id] # the shape we are translating *from* # # @param data_origin # defines the shapes we are translating to # # #param buffer [nil, Decimal] in meters # shrink, (or grow) the shape we are translating from # Typical use is to shrink, so that differences in spatial resolution # are minimized (low res shapes intersect with high res in undesireable ways) # # @return [Array] of GeographicItem ids # def self.translate_by_spatial_overlap(geographic_item_id, data_origin, buffer) return [] if geographic_item_id.blank? # !! Assumes all GeographicArea shapes were loaded to multi_polygon # (pre-adapts us to a single geometry field type), however be # aware of this assumption # This is a fast first pass, pure intersection a = GeographicItem .joins(:geographic_areas_geographic_items) .where(geographic_areas_geographic_items: { data_origin: }) .where( "ST_Intersects( multi_polygon, ( select #{ GeographicItem::GEOGRAPHY_SQL } from geographic_items where geographic_items.id = #{geographic_item_id}) )" ) .pluck(:id) return a if buffer.nil? # Refine the pass by smoothing using buffer/st_within return GeographicItem .where(id: a) .where( GeographicItem.st_buffer_st_within(geographic_item_id, 0.0, buffer) ) .pluck(:id) end # @return [Array] # @param origin_type # 'AssertedDistribution' or 'Georeference' # # @param data_origin Array, String # like `ne_states` or ['ne_states, 'ne_countries'] # # @param buffer [nil, Decimal] # shr,ink (or grow) the size of the target shape, in meters # Typical use, do not apply for Georeferences, apply -10km for AssertedDistributions # def self.translate_geographic_item_id(geographic_item_id, origin_type = nil, data_origin = nil, buffer = nil) return nil if data_origin.blank? cached_map_type = types_by_data_origin(data_origin) a = nil b = buffer # All these methods depend on "prior knowledge" (not spatial calculations) if origin_type == 'AssertedDistribution' a = translate_by_geographic_item_translation(geographic_item_id, cached_map_type) return a if a.present? a = translate_by_data_origin(geographic_item_id, data_origin) return a if a.present? a = translate_by_alternate_shape(geographic_item_id, data_origin) return a if a.present? a = translate_by_cached_map_usage(geographic_item_id, cached_map_type) return a if a.present? b = dynamic_buffer(geographic_item_id) # -1000.0 # Monaco end translate_by_spatial_overlap(geographic_item_id, data_origin, b) end def self.dynamic_buffer(geographic_item_id) v = GeographicItem.select(:id, :cached_total_area).find(geographic_item_id).cached_total_area return 0 if v.nil? case Math.log10(v).to_i when 0..2 # 3786 0.0 when 3..6 # Perhaps no GeographicAreas hit here -100.0 when 7 # e.g. Monaco 122 -1000 when 8 -2000 # e.g. Calhoun Co. 27490 when 9 -4000 # 3786 Cooma-Monaro when 10..12 -12000.0 # e.g. Brazil 33794; Canada 37 !! Seems to be a sweet spot, remainder untested else #(max is 13) -20000.0 # Antarctic, 10 end end # @return [Hash, nil] def self.stubs(source_object, cached_map_type) # return nil unless source_object.persisted? o = source_object h = { origin_object: o, cached_map_type:, otu_id: [], geographic_item_id: [], origin_geographic_item_id: nil } geographic_item_id = nil name_hierarchy = nil otu_id = nil base_class_name = o.class.base_class.name case base_class_name when 'AssertedDistribution' geographic_item_id = o.geographic_area.default_geographic_item_id otu_id = [o.otu_id] when 'Georeference' geographic_item_id = o.geographic_item_id otu_id = o.otus.joins('LEFT JOIN taxon_determinations td on otus.id = td.otu_id').where(taxon_determinations: { position: 1 }).distinct.pluck(:id) end # Some AssertedDistribution don't have shapes if geographic_item_id h[:origin_geographic_item_id] = geographic_item_id h[:geographic_item_id] = translate_geographic_item_id( geographic_item_id, base_class_name, cached_map_type.safe_constantize::SOURCE_GAZETEERS ) if h[:geographic_item_id].blank? h[:geographic_item_id] = [geographic_item_id] h[:untranslated] = true end end h[:otu_id] = otu_id h end # Create breadth-first CachedMapItems # Only applicable to Georeferences. # # @params batch_stubs [Hash] # { # map_type: , # geographic_item_id: [] # otu_id: [ [otu_id, :project_id], ... [] ], # georeference_id: [ [geoference_id, :project_id] ], # } # # def self.batch_create_georeference_cached_map_items(batch_stubs) map_type = batch_stubs[:map_type] j = batch_stubs[:geographic_item_id] k = batch_stubs[:otu_id] j.each do |geographic_item_id| k.each do |otu_id| otu_id = otu_id.first project_id = otu_id.second begin a = CachedMapItem.find_or_initialize_by( type: map_type, otu_id:, geographic_item_id:, project_id:, ) if a.persisted? a.increment!(:reference_count) else a.reference_count = 1 a.save! end rescue ActiveRecord::RecordInvalid => e logger.debug e rescue PG::UniqueViolation logger.debug 'pg unique violation' end end end # Register the Georeferences registrations = [] batch_stubs[:georeference_id].each do |georeference_id, project_id| registrations.push({ cached_map_register_object_type: 'Georeference', cached_map_register_object_id: georeference_id, project_id:, created_at: Time.current, updated_at: Time.current, }) end begin CachedMapRegister.insert_all(registrations) if registrations.present? rescue puts '!! Failed to register Georeferences in batch_create_georeference_cached_map_items.' end true end end |
#type ⇒ String
Returns Rails STI.
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# File 'app/models/cached_map_item.rb', line 44 class CachedMapItem < ApplicationRecord include Housekeeping::Projects include Housekeeping::Timestamps include Shared::IsData belongs_to :otu, inverse_of: :cached_map_items belongs_to :geographic_item, inverse_of: :cached_map_items validates_uniqueness_of :otu_id, scope: [:type, :geographic_item_id] validates_presence_of :otu, :geographic_item, :type # @return Hash # {country:, state:, county: } # Check to see if a record is already present rather than-recalculate spatially # CONSIDER: Use Reddis store to cache these results and look them up from there. # def self.cached_map_name_hierarchy(geographic_item_id) h = CachedMapItem .select('level0_geographic_name country, level1_geographic_name state, level2_geographic_name county') .where('level0_geographic_name IS NOT NULL OR level1_geographic_name IS NOT NULL OR level2_geographic_name IS NOT NULL') .find_by(geographic_item_id:) # finds first &.attributes &.compact! return h.symbolize_keys if h.present? GeographicItem.find(geographic_item_id).quick_geographic_name_hierarchy end def self.cached_map_geographic_items_by_otu(otu_scope = nil) return GeographicItem.none if otu_scope.nil? s = 'WITH otu_scope AS (' + otu_scope.all.to_sql + ') ' + ::GeographicItem .joins('JOIN cached_maps on cached_maps.geographic_item_id = geographic_items.id') .joins( 'JOIN otu_scope as otu_scope1 on otu_scope1.id = cached_maps.otu_id').to_sql ::GeographicItem.from('(' + s + ') as geographic_items').distinct end # @return Array def self.types_by_data_origin(data_origin = []) types = [] data_origin.each do |o| CachedMapItem.descendants.each do |d| types.push d.name if d::SOURCE_GAZETEERS.include?(o) end end types.uniq! types end # Check CachedMapItemTranslation for previous translations and use # that if possible def self.translate_by_geographic_item_translation(geographic_item_id, cached_map_type) a = CachedMapItemTranslation.where( cached_map_type:, geographic_item_id: ).pluck(:translated_geographic_item_id) .uniq # Just in case we duplicate the index, hopefully not needed (a.presence || []) end # @return [Array] # Return the geographic_item_id if it is already of the requested origin def self.translate_by_data_origin(geographic_item_id, data_origin) if ::GeographicAreasGeographicItem.where( geographic_item_id:, data_origin: ).any? return [geographic_item_id] else [] end end # @return [Array] # Return the geographic_item_id if it is already used in a CachedMapItem of the right type # !! Probably redundant with translate_by_data_origin !! def self.translate_by_cached_map_usage(geographic_item_id, cached_map_type) if ::CachedMapItem.where(geographic_item_id:, type: cached_map_type).any? return [geographic_item_id] else [] end end def self.translate_by_alternate_shape(geographic_item_id, data_origin) # GeographicItem is an alternate shape to a GeographicArea that *also* has a target gazeteer type if a = GeographicItem.find(geographic_item_id) .geographic_areas .joins(:geographic_items) .where(geographic_areas: { data_origin: }) .order(cached_total_area: :ASC) # smallest first .first &.id return [a] else [] end end # Given a set of target shapes, return those that intersect with the provided shape # # @param geographic_item_id [id] # the shape we are translating *from* # # @param data_origin # defines the shapes we are translating to # # #param buffer [nil, Decimal] in meters # shrink, (or grow) the shape we are translating from # Typical use is to shrink, so that differences in spatial resolution # are minimized (low res shapes intersect with high res in undesireable ways) # # @return [Array] of GeographicItem ids # def self.translate_by_spatial_overlap(geographic_item_id, data_origin, buffer) return [] if geographic_item_id.blank? # !! Assumes all GeographicArea shapes were loaded to multi_polygon # (pre-adapts us to a single geometry field type), however be # aware of this assumption # This is a fast first pass, pure intersection a = GeographicItem .joins(:geographic_areas_geographic_items) .where(geographic_areas_geographic_items: { data_origin: }) .where( "ST_Intersects( multi_polygon, ( select #{ GeographicItem::GEOGRAPHY_SQL } from geographic_items where geographic_items.id = #{geographic_item_id}) )" ) .pluck(:id) return a if buffer.nil? # Refine the pass by smoothing using buffer/st_within return GeographicItem .where(id: a) .where( GeographicItem.st_buffer_st_within(geographic_item_id, 0.0, buffer) ) .pluck(:id) end # @return [Array] # @param origin_type # 'AssertedDistribution' or 'Georeference' # # @param data_origin Array, String # like `ne_states` or ['ne_states, 'ne_countries'] # # @param buffer [nil, Decimal] # shr,ink (or grow) the size of the target shape, in meters # Typical use, do not apply for Georeferences, apply -10km for AssertedDistributions # def self.translate_geographic_item_id(geographic_item_id, origin_type = nil, data_origin = nil, buffer = nil) return nil if data_origin.blank? cached_map_type = types_by_data_origin(data_origin) a = nil b = buffer # All these methods depend on "prior knowledge" (not spatial calculations) if origin_type == 'AssertedDistribution' a = translate_by_geographic_item_translation(geographic_item_id, cached_map_type) return a if a.present? a = translate_by_data_origin(geographic_item_id, data_origin) return a if a.present? a = translate_by_alternate_shape(geographic_item_id, data_origin) return a if a.present? a = translate_by_cached_map_usage(geographic_item_id, cached_map_type) return a if a.present? b = dynamic_buffer(geographic_item_id) # -1000.0 # Monaco end translate_by_spatial_overlap(geographic_item_id, data_origin, b) end def self.dynamic_buffer(geographic_item_id) v = GeographicItem.select(:id, :cached_total_area).find(geographic_item_id).cached_total_area return 0 if v.nil? case Math.log10(v).to_i when 0..2 # 3786 0.0 when 3..6 # Perhaps no GeographicAreas hit here -100.0 when 7 # e.g. Monaco 122 -1000 when 8 -2000 # e.g. Calhoun Co. 27490 when 9 -4000 # 3786 Cooma-Monaro when 10..12 -12000.0 # e.g. Brazil 33794; Canada 37 !! Seems to be a sweet spot, remainder untested else #(max is 13) -20000.0 # Antarctic, 10 end end # @return [Hash, nil] def self.stubs(source_object, cached_map_type) # return nil unless source_object.persisted? o = source_object h = { origin_object: o, cached_map_type:, otu_id: [], geographic_item_id: [], origin_geographic_item_id: nil } geographic_item_id = nil name_hierarchy = nil otu_id = nil base_class_name = o.class.base_class.name case base_class_name when 'AssertedDistribution' geographic_item_id = o.geographic_area.default_geographic_item_id otu_id = [o.otu_id] when 'Georeference' geographic_item_id = o.geographic_item_id otu_id = o.otus.joins('LEFT JOIN taxon_determinations td on otus.id = td.otu_id').where(taxon_determinations: { position: 1 }).distinct.pluck(:id) end # Some AssertedDistribution don't have shapes if geographic_item_id h[:origin_geographic_item_id] = geographic_item_id h[:geographic_item_id] = translate_geographic_item_id( geographic_item_id, base_class_name, cached_map_type.safe_constantize::SOURCE_GAZETEERS ) if h[:geographic_item_id].blank? h[:geographic_item_id] = [geographic_item_id] h[:untranslated] = true end end h[:otu_id] = otu_id h end # Create breadth-first CachedMapItems # Only applicable to Georeferences. # # @params batch_stubs [Hash] # { # map_type: , # geographic_item_id: [] # otu_id: [ [otu_id, :project_id], ... [] ], # georeference_id: [ [geoference_id, :project_id] ], # } # # def self.batch_create_georeference_cached_map_items(batch_stubs) map_type = batch_stubs[:map_type] j = batch_stubs[:geographic_item_id] k = batch_stubs[:otu_id] j.each do |geographic_item_id| k.each do |otu_id| otu_id = otu_id.first project_id = otu_id.second begin a = CachedMapItem.find_or_initialize_by( type: map_type, otu_id:, geographic_item_id:, project_id:, ) if a.persisted? a.increment!(:reference_count) else a.reference_count = 1 a.save! end rescue ActiveRecord::RecordInvalid => e logger.debug e rescue PG::UniqueViolation logger.debug 'pg unique violation' end end end # Register the Georeferences registrations = [] batch_stubs[:georeference_id].each do |georeference_id, project_id| registrations.push({ cached_map_register_object_type: 'Georeference', cached_map_register_object_id: georeference_id, project_id:, created_at: Time.current, updated_at: Time.current, }) end begin CachedMapRegister.insert_all(registrations) if registrations.present? rescue puts '!! Failed to register Georeferences in batch_create_georeference_cached_map_items.' end true end end |
#untranslated ⇒ Boolean?
Returns if True then the the shape could not be mapped, by any translation method, to a shape allowable for this CachedMapItemType.
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# File 'app/models/cached_map_item.rb', line 44 class CachedMapItem < ApplicationRecord include Housekeeping::Projects include Housekeeping::Timestamps include Shared::IsData belongs_to :otu, inverse_of: :cached_map_items belongs_to :geographic_item, inverse_of: :cached_map_items validates_uniqueness_of :otu_id, scope: [:type, :geographic_item_id] validates_presence_of :otu, :geographic_item, :type # @return Hash # {country:, state:, county: } # Check to see if a record is already present rather than-recalculate spatially # CONSIDER: Use Reddis store to cache these results and look them up from there. # def self.cached_map_name_hierarchy(geographic_item_id) h = CachedMapItem .select('level0_geographic_name country, level1_geographic_name state, level2_geographic_name county') .where('level0_geographic_name IS NOT NULL OR level1_geographic_name IS NOT NULL OR level2_geographic_name IS NOT NULL') .find_by(geographic_item_id:) # finds first &.attributes &.compact! return h.symbolize_keys if h.present? GeographicItem.find(geographic_item_id).quick_geographic_name_hierarchy end def self.cached_map_geographic_items_by_otu(otu_scope = nil) return GeographicItem.none if otu_scope.nil? s = 'WITH otu_scope AS (' + otu_scope.all.to_sql + ') ' + ::GeographicItem .joins('JOIN cached_maps on cached_maps.geographic_item_id = geographic_items.id') .joins( 'JOIN otu_scope as otu_scope1 on otu_scope1.id = cached_maps.otu_id').to_sql ::GeographicItem.from('(' + s + ') as geographic_items').distinct end # @return Array def self.types_by_data_origin(data_origin = []) types = [] data_origin.each do |o| CachedMapItem.descendants.each do |d| types.push d.name if d::SOURCE_GAZETEERS.include?(o) end end types.uniq! types end # Check CachedMapItemTranslation for previous translations and use # that if possible def self.translate_by_geographic_item_translation(geographic_item_id, cached_map_type) a = CachedMapItemTranslation.where( cached_map_type:, geographic_item_id: ).pluck(:translated_geographic_item_id) .uniq # Just in case we duplicate the index, hopefully not needed (a.presence || []) end # @return [Array] # Return the geographic_item_id if it is already of the requested origin def self.translate_by_data_origin(geographic_item_id, data_origin) if ::GeographicAreasGeographicItem.where( geographic_item_id:, data_origin: ).any? return [geographic_item_id] else [] end end # @return [Array] # Return the geographic_item_id if it is already used in a CachedMapItem of the right type # !! Probably redundant with translate_by_data_origin !! def self.translate_by_cached_map_usage(geographic_item_id, cached_map_type) if ::CachedMapItem.where(geographic_item_id:, type: cached_map_type).any? return [geographic_item_id] else [] end end def self.translate_by_alternate_shape(geographic_item_id, data_origin) # GeographicItem is an alternate shape to a GeographicArea that *also* has a target gazeteer type if a = GeographicItem.find(geographic_item_id) .geographic_areas .joins(:geographic_items) .where(geographic_areas: { data_origin: }) .order(cached_total_area: :ASC) # smallest first .first &.id return [a] else [] end end # Given a set of target shapes, return those that intersect with the provided shape # # @param geographic_item_id [id] # the shape we are translating *from* # # @param data_origin # defines the shapes we are translating to # # #param buffer [nil, Decimal] in meters # shrink, (or grow) the shape we are translating from # Typical use is to shrink, so that differences in spatial resolution # are minimized (low res shapes intersect with high res in undesireable ways) # # @return [Array] of GeographicItem ids # def self.translate_by_spatial_overlap(geographic_item_id, data_origin, buffer) return [] if geographic_item_id.blank? # !! Assumes all GeographicArea shapes were loaded to multi_polygon # (pre-adapts us to a single geometry field type), however be # aware of this assumption # This is a fast first pass, pure intersection a = GeographicItem .joins(:geographic_areas_geographic_items) .where(geographic_areas_geographic_items: { data_origin: }) .where( "ST_Intersects( multi_polygon, ( select #{ GeographicItem::GEOGRAPHY_SQL } from geographic_items where geographic_items.id = #{geographic_item_id}) )" ) .pluck(:id) return a if buffer.nil? # Refine the pass by smoothing using buffer/st_within return GeographicItem .where(id: a) .where( GeographicItem.st_buffer_st_within(geographic_item_id, 0.0, buffer) ) .pluck(:id) end # @return [Array] # @param origin_type # 'AssertedDistribution' or 'Georeference' # # @param data_origin Array, String # like `ne_states` or ['ne_states, 'ne_countries'] # # @param buffer [nil, Decimal] # shr,ink (or grow) the size of the target shape, in meters # Typical use, do not apply for Georeferences, apply -10km for AssertedDistributions # def self.translate_geographic_item_id(geographic_item_id, origin_type = nil, data_origin = nil, buffer = nil) return nil if data_origin.blank? cached_map_type = types_by_data_origin(data_origin) a = nil b = buffer # All these methods depend on "prior knowledge" (not spatial calculations) if origin_type == 'AssertedDistribution' a = translate_by_geographic_item_translation(geographic_item_id, cached_map_type) return a if a.present? a = translate_by_data_origin(geographic_item_id, data_origin) return a if a.present? a = translate_by_alternate_shape(geographic_item_id, data_origin) return a if a.present? a = translate_by_cached_map_usage(geographic_item_id, cached_map_type) return a if a.present? b = dynamic_buffer(geographic_item_id) # -1000.0 # Monaco end translate_by_spatial_overlap(geographic_item_id, data_origin, b) end def self.dynamic_buffer(geographic_item_id) v = GeographicItem.select(:id, :cached_total_area).find(geographic_item_id).cached_total_area return 0 if v.nil? case Math.log10(v).to_i when 0..2 # 3786 0.0 when 3..6 # Perhaps no GeographicAreas hit here -100.0 when 7 # e.g. Monaco 122 -1000 when 8 -2000 # e.g. Calhoun Co. 27490 when 9 -4000 # 3786 Cooma-Monaro when 10..12 -12000.0 # e.g. Brazil 33794; Canada 37 !! Seems to be a sweet spot, remainder untested else #(max is 13) -20000.0 # Antarctic, 10 end end # @return [Hash, nil] def self.stubs(source_object, cached_map_type) # return nil unless source_object.persisted? o = source_object h = { origin_object: o, cached_map_type:, otu_id: [], geographic_item_id: [], origin_geographic_item_id: nil } geographic_item_id = nil name_hierarchy = nil otu_id = nil base_class_name = o.class.base_class.name case base_class_name when 'AssertedDistribution' geographic_item_id = o.geographic_area.default_geographic_item_id otu_id = [o.otu_id] when 'Georeference' geographic_item_id = o.geographic_item_id otu_id = o.otus.joins('LEFT JOIN taxon_determinations td on otus.id = td.otu_id').where(taxon_determinations: { position: 1 }).distinct.pluck(:id) end # Some AssertedDistribution don't have shapes if geographic_item_id h[:origin_geographic_item_id] = geographic_item_id h[:geographic_item_id] = translate_geographic_item_id( geographic_item_id, base_class_name, cached_map_type.safe_constantize::SOURCE_GAZETEERS ) if h[:geographic_item_id].blank? h[:geographic_item_id] = [geographic_item_id] h[:untranslated] = true end end h[:otu_id] = otu_id h end # Create breadth-first CachedMapItems # Only applicable to Georeferences. # # @params batch_stubs [Hash] # { # map_type: , # geographic_item_id: [] # otu_id: [ [otu_id, :project_id], ... [] ], # georeference_id: [ [geoference_id, :project_id] ], # } # # def self.batch_create_georeference_cached_map_items(batch_stubs) map_type = batch_stubs[:map_type] j = batch_stubs[:geographic_item_id] k = batch_stubs[:otu_id] j.each do |geographic_item_id| k.each do |otu_id| otu_id = otu_id.first project_id = otu_id.second begin a = CachedMapItem.find_or_initialize_by( type: map_type, otu_id:, geographic_item_id:, project_id:, ) if a.persisted? a.increment!(:reference_count) else a.reference_count = 1 a.save! end rescue ActiveRecord::RecordInvalid => e logger.debug e rescue PG::UniqueViolation logger.debug 'pg unique violation' end end end # Register the Georeferences registrations = [] batch_stubs[:georeference_id].each do |georeference_id, project_id| registrations.push({ cached_map_register_object_type: 'Georeference', cached_map_register_object_id: georeference_id, project_id:, created_at: Time.current, updated_at: Time.current, }) end begin CachedMapRegister.insert_all(registrations) if registrations.present? rescue puts '!! Failed to register Georeferences in batch_create_georeference_cached_map_items.' end true end end |
Class Method Details
.batch_create_georeference_cached_map_items(batch_stubs) ⇒ Object
Create breadth-first CachedMapItems
Only applicable to Georeferences.
map_type: ,
geographic_item_id: []
otu_id: [ [otu_id, :project_id], ... [] ],
georeference_id: [ [geoference_id, :project_id] ],
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# File 'app/models/cached_map_item.rb', line 308 def self.batch_create_georeference_cached_map_items(batch_stubs) map_type = batch_stubs[:map_type] j = batch_stubs[:geographic_item_id] k = batch_stubs[:otu_id] j.each do |geographic_item_id| k.each do |otu_id| otu_id = otu_id.first project_id = otu_id.second begin a = CachedMapItem.find_or_initialize_by( type: map_type, otu_id:, geographic_item_id:, project_id:, ) if a.persisted? a.increment!(:reference_count) else a.reference_count = 1 a.save! end rescue ActiveRecord::RecordInvalid => e logger.debug e rescue PG::UniqueViolation logger.debug 'pg unique violation' end end end # Register the Georeferences registrations = [] batch_stubs[:georeference_id].each do |georeference_id, project_id| registrations.push({ cached_map_register_object_type: 'Georeference', cached_map_register_object_id: georeference_id, project_id:, created_at: Time.current, updated_at: Time.current, }) end begin CachedMapRegister.insert_all(registrations) if registrations.present? rescue puts '!! Failed to register Georeferences in batch_create_georeference_cached_map_items.' end true end |
.cached_map_geographic_items_by_otu(otu_scope = nil) ⇒ Object
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# File 'app/models/cached_map_item.rb', line 73 def self.cached_map_geographic_items_by_otu(otu_scope = nil) return GeographicItem.none if otu_scope.nil? s = 'WITH otu_scope AS (' + otu_scope.all.to_sql + ') ' + ::GeographicItem .joins('JOIN cached_maps on cached_maps.geographic_item_id = geographic_items.id') .joins( 'JOIN otu_scope as otu_scope1 on otu_scope1.id = cached_maps.otu_id').to_sql ::GeographicItem.from('(' + s + ') as geographic_items').distinct end |
.cached_map_name_hierarchy(geographic_item_id) ⇒ Object
Check to see if a record is already present rather than-recalculate spatially
CONSIDER: Use Reddis store to cache these results and look them up from there.
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# File 'app/models/cached_map_item.rb', line 60 def self.cached_map_name_hierarchy(geographic_item_id) h = CachedMapItem .select('level0_geographic_name country, level1_geographic_name state, level2_geographic_name county') .where('level0_geographic_name IS NOT NULL OR level1_geographic_name IS NOT NULL OR level2_geographic_name IS NOT NULL') .find_by(geographic_item_id:) # finds first &.attributes &.compact! return h.symbolize_keys if h.present? GeographicItem.find(geographic_item_id).quick_geographic_name_hierarchy end |
.dynamic_buffer(geographic_item_id) ⇒ Object
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# File 'app/models/cached_map_item.rb', line 226 def self.dynamic_buffer(geographic_item_id) v = GeographicItem.select(:id, :cached_total_area).find(geographic_item_id).cached_total_area return 0 if v.nil? case Math.log10(v).to_i when 0..2 # 3786 0.0 when 3..6 # Perhaps no GeographicAreas hit here -100.0 when 7 # e.g. Monaco 122 -1000 when 8 -2000 # e.g. Calhoun Co. 27490 when 9 -4000 # 3786 Cooma-Monaro when 10..12 -12000.0 # e.g. Brazil 33794; Canada 37 !! Seems to be a sweet spot, remainder untested else #(max is 13) -20000.0 # Antarctic, 10 end end |
.stubs(source_object, cached_map_type) ⇒ Hash?
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# File 'app/models/cached_map_item.rb', line 248 def self.stubs(source_object, cached_map_type) # return nil unless source_object.persisted? o = source_object h = { origin_object: o, cached_map_type:, otu_id: [], geographic_item_id: [], origin_geographic_item_id: nil } geographic_item_id = nil name_hierarchy = nil otu_id = nil base_class_name = o.class.base_class.name case base_class_name when 'AssertedDistribution' geographic_item_id = o.geographic_area.default_geographic_item_id otu_id = [o.otu_id] when 'Georeference' geographic_item_id = o.geographic_item_id otu_id = o.otus.joins('LEFT JOIN taxon_determinations td on otus.id = td.otu_id').where(taxon_determinations: { position: 1 }).distinct.pluck(:id) end # Some AssertedDistribution don't have shapes if geographic_item_id h[:origin_geographic_item_id] = geographic_item_id h[:geographic_item_id] = translate_geographic_item_id( geographic_item_id, base_class_name, cached_map_type.safe_constantize::SOURCE_GAZETEERS ) if h[:geographic_item_id].blank? h[:geographic_item_id] = [geographic_item_id] h[:untranslated] = true end end h[:otu_id] = otu_id h end |
.translate_by_alternate_shape(geographic_item_id, data_origin) ⇒ Object
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# File 'app/models/cached_map_item.rb', line 133 def self.translate_by_alternate_shape(geographic_item_id, data_origin) # GeographicItem is an alternate shape to a GeographicArea that *also* has a target gazeteer type if a = GeographicItem.find(geographic_item_id) .geographic_areas .joins(:geographic_items) .where(geographic_areas: { data_origin: }) .order(cached_total_area: :ASC) # smallest first .first &.id return [a] else [] end end |
.translate_by_cached_map_usage(geographic_item_id, cached_map_type) ⇒ Array
Return the geographic_item_id if it is already used in a CachedMapItem of the right type
!! Probably redundant with translate_by_data_origin !!
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# File 'app/models/cached_map_item.rb', line 125 def self.translate_by_cached_map_usage(geographic_item_id, cached_map_type) if ::CachedMapItem.where(geographic_item_id:, type: cached_map_type).any? return [geographic_item_id] else [] end end |
.translate_by_data_origin(geographic_item_id, data_origin) ⇒ Array
Return the geographic_item_id if it is already of the requested origin
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# File 'app/models/cached_map_item.rb', line 111 def self.translate_by_data_origin(geographic_item_id, data_origin) if ::GeographicAreasGeographicItem.where( geographic_item_id:, data_origin: ).any? return [geographic_item_id] else [] end end |
.translate_by_geographic_item_translation(geographic_item_id, cached_map_type) ⇒ Object
Check CachedMapItemTranslation for previous translations and use
that if possible
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# File 'app/models/cached_map_item.rb', line 99 def self.translate_by_geographic_item_translation(geographic_item_id, cached_map_type) a = CachedMapItemTranslation.where( cached_map_type:, geographic_item_id: ).pluck(:translated_geographic_item_id) .uniq # Just in case we duplicate the index, hopefully not needed (a.presence || []) end |
.translate_by_spatial_overlap(geographic_item_id, data_origin, buffer) ⇒ Array
Given a set of target shapes, return those that intersect with the provided shape
#param buffer [nil, Decimal] in meters
shrink, (or grow) the shape we are translating from
Typical use is to shrink, so that differences in spatial resolution
are minimized (low res shapes intersect with high res in undesireable ways)
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# File 'app/models/cached_map_item.rb', line 163 def self.translate_by_spatial_overlap(geographic_item_id, data_origin, buffer) return [] if geographic_item_id.blank? # !! Assumes all GeographicArea shapes were loaded to multi_polygon # (pre-adapts us to a single geometry field type), however be # aware of this assumption # This is a fast first pass, pure intersection a = GeographicItem .joins(:geographic_areas_geographic_items) .where(geographic_areas_geographic_items: { data_origin: }) .where( "ST_Intersects( multi_polygon, ( select #{ GeographicItem::GEOGRAPHY_SQL } from geographic_items where geographic_items.id = #{geographic_item_id}) )" ) .pluck(:id) return a if buffer.nil? # Refine the pass by smoothing using buffer/st_within return GeographicItem .where(id: a) .where( GeographicItem.st_buffer_st_within(geographic_item_id, 0.0, buffer) ) .pluck(:id) end |
.translate_geographic_item_id(geographic_item_id, origin_type = nil, data_origin = nil, buffer = nil) ⇒ Array
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# File 'app/models/cached_map_item.rb', line 197 def self.translate_geographic_item_id(geographic_item_id, origin_type = nil, data_origin = nil, buffer = nil) return nil if data_origin.blank? cached_map_type = types_by_data_origin(data_origin) a = nil b = buffer # All these methods depend on "prior knowledge" (not spatial calculations) if origin_type == 'AssertedDistribution' a = translate_by_geographic_item_translation(geographic_item_id, cached_map_type) return a if a.present? a = translate_by_data_origin(geographic_item_id, data_origin) return a if a.present? a = translate_by_alternate_shape(geographic_item_id, data_origin) return a if a.present? a = translate_by_cached_map_usage(geographic_item_id, cached_map_type) return a if a.present? b = dynamic_buffer(geographic_item_id) # -1000.0 # Monaco end translate_by_spatial_overlap(geographic_item_id, data_origin, b) end |
.types_by_data_origin(data_origin = []) ⇒ Object
Returns Array.
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# File 'app/models/cached_map_item.rb', line 85 def self.types_by_data_origin(data_origin = []) types = [] data_origin.each do |o| CachedMapItem.descendants.each do |d| types.push d.name if d::SOURCE_GAZETEERS.include?(o) end end types.uniq! types end |