Class: CollectionObjectsController
- Inherits:
-
ApplicationController
- Object
- ActionController::Base
- ApplicationController
- CollectionObjectsController
- Defined in:
- app/controllers/collection_objects_controller.rb
Instance Method Summary collapse
-
#add_includes_to_filter_result(collection_objects) ⇒ Object
private
An experiment to balance query/rendering times vs.
- #after_destroy_path ⇒ Object private
- #api_autocomplete ⇒ Object
-
#api_dwc ⇒ Object
GET /api/v1/collection_objects/123/dwc.
-
#api_index ⇒ Object
GET /api/v1/collection_objects.
-
#api_show ⇒ Object
GET /api/v1/collection_objects/:id.
- #autocomplete ⇒ Object
-
#batch_load ⇒ Object
GET collection_objects/batch_load.
- #batch_params ⇒ Object private
- #biocuration_classifications ⇒ Object
-
#by_identifier ⇒ Object
GET /collection_objects/by_identifier/ABCD TODO: remove for filter.
- #collection_object_params ⇒ Object private
- #containerize ⇒ Object
-
#create ⇒ Object
POST /collection_objects POST /collection_objects.json.
- #create_buffered_batch_load ⇒ Object
- #create_castor_batch_load ⇒ Object
- #create_simple_batch_load ⇒ Object
-
#depictions ⇒ Object
GET /collection_objects/depictions/1 GET /collection_objects/depictions/1.html This is.
-
#destroy ⇒ Object
DELETE /collection_objects/1 DELETE /collection_objects/1.json.
-
#download ⇒ Object
GET /collection_objects/download.
-
#dwc ⇒ Object
GET /collection_objects/123/dwc.
-
#dwc_index ⇒ Object
Render DWC fields only.
-
#dwc_verbose ⇒ Object
GET /collection_objects/123/dwc_verbose.
-
#dwca ⇒ Object
DEPRECATED GET /collection_objects/dwca/123 # SHOULD BE dwc.
-
#edit ⇒ Object
GET /collection_objects/1/edit.
-
#geo_json ⇒ Object
TODO: render in view GET /collection_objects/1/geo_json GET /collection_objects/1/geo_json.json.
-
#images ⇒ Object
GET /collection_objects/1/inventory/images.html GET /collection_objects/1/images.json.
-
#index ⇒ Object
GET /collecting_events GET /collecting_events.json.
-
#index_metadata ⇒ Object
/collection_objects/index_metadata/.json.
-
#list ⇒ Object
GET /collection_objects/list.
- #metadata_badge ⇒ Object
-
#metadata_index(models = {}) ⇒ Object
TODO: probably some deep clean TODO: Move.
- #navigation ⇒ Object
-
#new ⇒ Object
GET /collection_objects/new.
-
#preview ⇒ Object
/collection_objects/preview?<filter params>.
- #preview_buffered_batch_load ⇒ Object
- #preview_castor_batch_load ⇒ Object
- #preview_simple_batch_load ⇒ Object
-
#report ⇒ Object
Intent is DWC fields + quick summary fields for reports !! As currently implemented rebuilds DWC all.
-
#search ⇒ Object
GET /collection_object/search.
- #select_options ⇒ Object
- #set_collection_object ⇒ Object private
-
#show ⇒ Object
GET /collection_objects/1 GET /collection_objects/1.json.
-
#timeline ⇒ Object
GET /collection_objects/1/timeline.json.
-
#update ⇒ Object
PATCH/PUT /collection_objects/1 PATCH/PUT /collection_objects/1.json.
-
#user_map ⇒ Object
private
TODO: not used?.
Methods included from DataControllerConfiguration::ProjectDataControllerConfiguration
Methods included from RedirectHelper
Methods included from RequestType
Methods included from LogRecent
Methods included from Cookies
#digest_cookie, #digested_cookie_exists?
Methods included from Whitelist
Methods included from Api::Intercept
Methods included from TokenAuthentication
#intercept_project, #intercept_user, #intercept_user_or_project, #project_token_authenticate, #token_authenticate
Instance Method Details
#add_includes_to_filter_result(collection_objects) ⇒ Object (private)
An experiment to balance query/rendering times vs. extend[] requests Likely suggests we need some fundamental changes.
460 461 462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479 480 481 482 |
# File 'app/controllers/collection_objects_controller.rb', line 460 def add_includes_to_filter_result(collection_objects) a = %i(identifiers dwc_occurrence repository current_repository) x = [] a.each do |e| if helpers.extend_response_with(e.to_s) x.push e end end if x.any? collection_objects = collection_objects.includes(*x) end if helpers.extend_response_with('collecting_event') collection_objects = collection_objects.includes(collecting_event: [:identifiers]) end if helpers.extend_response_with('taxon_determinations') collection_objects = collection_objects.includes(taxon_determinations: [:otu, roles: [:person]]) end collection_objects end |
#after_destroy_path ⇒ Object (private)
394 395 396 397 398 399 400 401 402 403 404 |
# File 'app/controllers/collection_objects_controller.rb', line 394 def after_destroy_path if request.referer =~ /tasks\/collection_objects\/browse/ if o = @collection_object.next_by_identifier browse_collection_objects_path(collection_object_id: o.id) else browse_collection_objects_path end else collection_objects_path end end |
#api_autocomplete ⇒ Object
378 379 380 381 382 |
# File 'app/controllers/collection_objects_controller.rb', line 378 def api_autocomplete render json: {} and return if params[:term].blank? @collection_objects = ::Queries::CollectionObject::Autocomplete.new(params[:term], project_id: sessions_current_project_id).autocomplete render '/collection_objects/api/v1/autocomplete' end |
#api_dwc ⇒ Object
GET /api/v1/collection_objects/123/dwc
385 386 387 388 389 390 |
# File 'app/controllers/collection_objects_controller.rb', line 385 def api_dwc ActiveRecord::Base.connection_pool.with_connection do @collection_object.get_dwc_occurrence render json: @collection_object.dwc_occurrence_attributes end end |
#api_index ⇒ Object
GET /api/v1/collection_objects
365 366 367 368 369 370 371 |
# File 'app/controllers/collection_objects_controller.rb', line 365 def api_index @collection_objects = ::Queries::CollectionObject::Filter.new(params.merge!(api: true)).all .where(project_id: sessions_current_project_id) .order('collection_objects.id') .page(params[:page]).per(params[:per]) render '/collection_objects/api/v1/index' end |
#api_show ⇒ Object
GET /api/v1/collection_objects/:id
374 375 376 |
# File 'app/controllers/collection_objects_controller.rb', line 374 def api_show render '/collection_objects/api/v1/show' end |
#autocomplete ⇒ Object
356 357 358 359 360 361 362 |
# File 'app/controllers/collection_objects_controller.rb', line 356 def autocomplete @collection_objects = ::Queries::CollectionObject::Autocomplete.new( params[:term], project_id: sessions_current_project_id ).autocomplete end |
#batch_load ⇒ Object
GET collection_objects/batch_load
265 266 |
# File 'app/controllers/collection_objects_controller.rb', line 265 def batch_load end |
#batch_params ⇒ Object (private)
438 439 440 441 |
# File 'app/controllers/collection_objects_controller.rb', line 438 def batch_params params.permit(:file, :import_level, :source_id, :otu_id) .merge(user_id: sessions_current_user_id, project_id: sessions_current_project_id).to_h.symbolize_keys end |
#biocuration_classifications ⇒ Object
72 73 74 75 |
# File 'app/controllers/collection_objects_controller.rb', line 72 def biocuration_classifications @biocuration_classifications = @collection_object.biocuration_classifications render '/biocuration_classifications/index' end |
#by_identifier ⇒ Object
GET /collection_objects/by_identifier/ABCD TODO: remove for filter
180 181 182 183 184 185 186 |
# File 'app/controllers/collection_objects_controller.rb', line 180 def by_identifier @identifier = params.require(:identifier) @request_project_id = sessions_current_project_id @collection_objects = CollectionObject.with_identifier(@identifier).where(project_id: @request_project_id).all raise ActiveRecord::RecordNotFound if @collection_objects.empty? end |
#collection_object_params ⇒ Object (private)
411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 |
# File 'app/controllers/collection_objects_controller.rb', line 411 def collection_object_params params.require(:collection_object).permit( :total, :preparation_type_id, :repository_id, :current_repository_id, :ranged_lot_category_id, :collecting_event_id, :buffered_collecting_event, :buffered_determinations, :buffered_other_labels, :accessioned_at, :deaccessioned_at, :deaccession_reason, :contained_in, :taxon_determination_id, collecting_event_attributes: [], # needs to be filled out! data_attributes_attributes: [ :id, :_destroy, :controlled_vocabulary_term_id, :type, :value ], tags_attributes: [:id, :_destroy, :keyword_id], identifiers_attributes: [ :id, :_destroy, :identifier, :namespace_id, :type, labels_attributes: [ :text, :type, :text_method, :total ] ] ) end |
#containerize ⇒ Object
296 297 298 |
# File 'app/controllers/collection_objects_controller.rb', line 296 def containerize @container_item = ContainerItem.new(contained_object: @collection_object) end |
#create ⇒ Object
POST /collection_objects POST /collection_objects.json
199 200 201 202 203 204 205 206 207 208 209 210 211 |
# File 'app/controllers/collection_objects_controller.rb', line 199 def create @collection_object = CollectionObject.new(collection_object_params) respond_to do |format| if @collection_object.save format.html { redirect_to url_for(@collection_object.), notice: 'Collection object was successfully created.' } format.json { render action: 'show', status: :created, location: @collection_object. } else format.html { render action: 'new' } format.json { render json: @collection_object.errors, status: :unprocessable_entity } end end end |
#create_buffered_batch_load ⇒ Object
337 338 339 340 341 342 343 344 345 346 347 348 349 350 |
# File 'app/controllers/collection_objects_controller.rb', line 337 def create_buffered_batch_load if params[:file] && (params[:file].tempfile, :Buffered_collection_objects_md5) @result = BatchLoad::Import::CollectionObjects::BufferedInterpreter.new(**batch_params) if @result.create flash[:notice] = "Successfully proccessed file, #{@result.total_records_created} items were created." render 'collection_objects/batch_load/buffered/create' and return else flash[:alert] = 'Batch import failed.' end else flash[:alert] = 'File to batch upload must be supplied.' end render :batch_load end |
#create_castor_batch_load ⇒ Object
311 312 313 314 315 316 317 318 319 320 321 322 323 324 |
# File 'app/controllers/collection_objects_controller.rb', line 311 def create_castor_batch_load if params[:file] && (params[:file].tempfile, :Castor_collection_objects_md5) @result = BatchLoad::Import::CollectionObjects::CastorInterpreter.new(**batch_params) if @result.create flash[:notice] = "Successfully proccessed file, #{@result.total_records_created} items were created." render 'collection_objects/batch_load/castor/create' and return else flash[:alert] = 'Batch import failed.' end else flash[:alert] = 'File to batch upload must be supplied.' end render :batch_load end |
#create_simple_batch_load ⇒ Object
279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 |
# File 'app/controllers/collection_objects_controller.rb', line 279 def create_simple_batch_load if params[:file] && ( params[:file].tempfile, :batch_collection_objects_md5) @result = BatchLoad::Import::CollectionObjects.new(**batch_params.merge(user_map)) if @result.create flash[:notice] = "Successfully proccessed file, #{@result.total_records_created} collection object-related object-sets were created." render 'collection_objects/batch_load/simple/create' and return else flash[:alert] = 'Batch import failed.' end else flash[:alert] = 'File to batch upload must be supplied.' end render :batch_load end |
#depictions ⇒ Object
GET /collection_objects/depictions/1 GET /collection_objects/depictions/1.html This is
147 148 |
# File 'app/controllers/collection_objects_controller.rb', line 147 def depictions end |
#destroy ⇒ Object
DELETE /collection_objects/1 DELETE /collection_objects/1.json
230 231 232 233 234 235 236 237 238 239 240 241 |
# File 'app/controllers/collection_objects_controller.rb', line 230 def destroy @collection_object.destroy respond_to do |format| if @collection_object.destroyed? format.html { redirect_to after_destroy_path, notice: 'CollectionObject was successfully destroyed.' } format.json { head :no_content } else format.html { destroy_redirect @collection_object, notice: 'CollectionObject was not destroyed, ' + @collection_object.errors..join('; ') } format.json { render json: @collection_object.errors, status: :unprocessable_entity } end end end |
#download ⇒ Object
GET /collection_objects/download
260 261 262 |
# File 'app/controllers/collection_objects_controller.rb', line 260 def download send_data Export::Download.generate_csv(CollectionObject.where(project_id: sessions_current_project_id), header_converters: []), type: 'text', filename: "collection_objects_#{DateTime.now}.csv" end |
#dwc ⇒ Object
GET /collection_objects/123/dwc
100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 |
# File 'app/controllers/collection_objects_controller.rb', line 100 def dwc o = nil ActiveRecord::Base.connection_pool.with_connection do o = CollectionObject.find(params[:id]) if params[:rebuild] == 'true' # get does not rebuild, but does set if it doesn't exist o.set_dwc_occurrence else o.get_dwc_occurrence end # Default to *exclude* some fields that include large text, like geospatial mode = params[:mode] || :view render json: o.dwc_occurrence_attribute_values(mode) end end |
#dwc_index ⇒ Object
Render DWC fields only
88 89 90 91 92 93 94 95 96 97 |
# File 'app/controllers/collection_objects_controller.rb', line 88 def dwc_index objects = ::Queries::CollectionObject::Filter.new(params).all.order('collection_objects.id').includes(:dwc_occurrence).page(params[:page]).per(params[:per]).all assign_pagination(objects) # Default to *exclude* some big fields, like geo-spatial wkt mode = params[:mode] || :view @objects = objects.pluck(*::CollectionObject.dwc_attribute_vector(mode)) @headers = ::CollectionObject.dwc_attribute_vector_names(mode) render '/dwc_occurrences/dwc_index' end |
#dwc_verbose ⇒ Object
GET /collection_objects/123/dwc_verbose
118 119 120 121 122 123 124 125 126 127 128 129 130 131 |
# File 'app/controllers/collection_objects_controller.rb', line 118 def dwc_verbose o = nil ActiveRecord::Base.connection_pool.with_connection do o = CollectionObject.find(params[:id]) if params[:rebuild] == 'true' # get does not rebuild o.set_dwc_occurrence else o.get_dwc_occurrence end end render json: o.dwc_occurrence_attributes end |
#dwca ⇒ Object
DEPRECATED GET /collection_objects/dwca/123 # SHOULD BE dwc
82 83 84 85 |
# File 'app/controllers/collection_objects_controller.rb', line 82 def dwca @dwc_occurrence = CollectionObject.includes(:dwc_occurrence).find(params[:id]).get_dwc_occurrence # find or compute for render json: @dwc_occurrence.to_json end |
#edit ⇒ Object
GET /collection_objects/1/edit
194 195 |
# File 'app/controllers/collection_objects_controller.rb', line 194 def edit end |
#geo_json ⇒ Object
TODO: render in view GET /collection_objects/1/geo_json GET /collection_objects/1/geo_json.json
173 174 175 176 |
# File 'app/controllers/collection_objects_controller.rb', line 173 def geo_json ce = @collection_object.collecting_event @geo_json = ce.nil? ? nil : ce.to_geo_json_feature end |
#images ⇒ Object
GET /collection_objects/1/inventory/images.html GET /collection_objects/1/images.json
155 156 157 158 159 160 161 162 163 164 165 166 167 168 |
# File 'app/controllers/collection_objects_controller.rb', line 155 def images @images = ::Queries::Image::Filter.new( collection_object_id: [ params.require(:id)], collection_object_scope: [:all] ) respond_to do |format| format.html { @images = @images.all } format.json do # rendered as Depictions for now @depictions = @iamges.derived_depictions render '/depictions/index' and return end end end |
#index ⇒ Object
GET /collecting_events GET /collecting_events.json
13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 |
# File 'app/controllers/collection_objects_controller.rb', line 13 def index respond_to do |format| format.html do @recent_objects = CollectionObject.recent_from_project_id(sessions_current_project_id) .order(updated_at: :desc) .includes(:identifiers, :taxon_determinations) .limit(10) render '/shared/data/all/index' end format.json do @collection_objects = ::Queries::CollectionObject::Filter.new(params).all @collection_objects = add_includes_to_filter_result(@collection_objects) @collection_objects = @collection_objects .page(params[:page]) .per(params[:per]) end end end |
#index_metadata ⇒ Object
/collection_objects/index_metadata/.json
35 36 37 38 39 40 41 42 43 44 45 46 47 48 |
# File 'app/controllers/collection_objects_controller.rb', line 35 def render json: ( { repository: Repository, current_respository: Repository, collecting_event: CollectingEvent, taxon_determinations: TaxonDetermination }) .merge( dwc_occurrence: DwcOccurrence.target_columns.inject({}){|hsh,p| hsh[p] = nil; hsh}.delete_if{|k,v| k =~ /(_id|_type)\z/} ) .merge( CollectionObject.core_attributes.inject({}){|hsh,p| hsh[p] = nil; hsh}) .merge( identifiers: nil, object_tag: nil, object_label: nil, ).delete_if{|k,v| k =~ /(_id|_type)\z/} end |
#list ⇒ Object
GET /collection_objects/list
244 245 246 247 248 |
# File 'app/controllers/collection_objects_controller.rb', line 244 def list @collection_objects = CollectionObject.with_project_id(sessions_current_project_id) .order(:id) .page(params[:page]) #.per(10) #.per(3) end |
#metadata_badge ⇒ Object
150 151 |
# File 'app/controllers/collection_objects_controller.rb', line 150 def end |
#metadata_index(models = {}) ⇒ Object
TODO: probably some deep clean TODO: Move
52 53 54 55 56 57 58 59 60 |
# File 'app/controllers/collection_objects_controller.rb', line 52 def (models = {}) h = {} models.each do |l, m| h.merge!( l => m.core_attributes.inject({}){|hsh,p| hsh[p] = nil; hsh} ) end h end |
#navigation ⇒ Object
77 78 |
# File 'app/controllers/collection_objects_controller.rb', line 77 def end |
#new ⇒ Object
GET /collection_objects/new
189 190 191 |
# File 'app/controllers/collection_objects_controller.rb', line 189 def new @collection_object = CollectionObject.new end |
#preview ⇒ Object
/collection_objects/preview?<filter params>
140 141 142 |
# File 'app/controllers/collection_objects_controller.rb', line 140 def preview @collection_objects = ::Queries::CollectionObject::Filter.new(params).all.order('collection_objects.id').includes(:dwc_occurrence).page(params[:page]).per(params[:per] || 500) end |
#preview_buffered_batch_load ⇒ Object
326 327 328 329 330 331 332 333 334 335 |
# File 'app/controllers/collection_objects_controller.rb', line 326 def preview_buffered_batch_load if params[:file] @result = BatchLoad::Import::CollectionObjects::BufferedInterpreter.new(**batch_params) (params[:file].tempfile, :Buffered_collection_objects_md5) render 'collection_objects/batch_load/buffered/preview' else flash[:notice] = 'No file provided!' redirect_to action: :batch_load end end |
#preview_castor_batch_load ⇒ Object
300 301 302 303 304 305 306 307 308 309 |
# File 'app/controllers/collection_objects_controller.rb', line 300 def preview_castor_batch_load if params[:file] @result = BatchLoad::Import::CollectionObjects::CastorInterpreter.new(**batch_params) (params[:file].tempfile, :Castor_collection_objects_md5) render 'collection_objects/batch_load/castor/preview' else flash[:notice] = 'No file provided!' redirect_to action: :batch_load end end |
#preview_simple_batch_load ⇒ Object
268 269 270 271 272 273 274 275 276 277 |
# File 'app/controllers/collection_objects_controller.rb', line 268 def preview_simple_batch_load if params[:file] @result = BatchLoad::Import::CollectionObjects.new(**batch_params.merge(user_map)) (params[:file].tempfile, :batch_collection_objects_md5) render 'collection_objects/batch_load/simple/preview' else flash[:notice] = 'No file provided!' redirect_to action: :batch_load end end |
#report ⇒ Object
Intent is DWC fields + quick summary fields for reports !! As currently implemented rebuilds DWC all
135 136 137 |
# File 'app/controllers/collection_objects_controller.rb', line 135 def report @collection_objects = ::Queries::CollectionObject::Filter.new(params).all.order('collection_objects.id').includes(:dwc_occurrence).page(params[:page]).per(params[:per] || 500) end |
#search ⇒ Object
GET /collection_object/search
251 252 253 254 255 256 257 |
# File 'app/controllers/collection_objects_controller.rb', line 251 def search if params[:id].blank? redirect_to collection_object_path, alert: 'You must select an item from the list with a click or tab press before clicking show.' else redirect_to collection_object_path(params[:id]) end end |
#select_options ⇒ Object
352 353 354 |
# File 'app/controllers/collection_objects_controller.rb', line 352 def @collection_objects = CollectionObject.select_optimized(sessions_current_user_id, sessions_current_project_id, params[:target]) end |
#set_collection_object ⇒ Object (private)
406 407 408 409 |
# File 'app/controllers/collection_objects_controller.rb', line 406 def set_collection_object @collection_object = CollectionObject.with_project_id(sessions_current_project_id).find(params[:id]) @recent_object = @collection_object end |
#show ⇒ Object
GET /collection_objects/1 GET /collection_objects/1.json
64 65 |
# File 'app/controllers/collection_objects_controller.rb', line 64 def show end |
#timeline ⇒ Object
GET /collection_objects/1/timeline.json
68 69 70 |
# File 'app/controllers/collection_objects_controller.rb', line 68 def timeline @data = ::Catalog::CollectionObject.data_for(@collection_object) end |
#update ⇒ Object
PATCH/PUT /collection_objects/1 PATCH/PUT /collection_objects/1.json
215 216 217 218 219 220 221 222 223 224 225 226 |
# File 'app/controllers/collection_objects_controller.rb', line 215 def update respond_to do |format| if @collection_object.update(collection_object_params) @collection_object = @collection_object. format.html { redirect_to url_for(@collection_object), notice: 'Collection object was successfully updated.' } format.json { render :show, status: :ok, location: @collection_object } else format.html { render action: 'edit' } format.json { render json: @collection_object.errors, status: :unprocessable_entity } end end end |
#user_map ⇒ Object (private)
TODO: not used?
444 445 446 447 448 449 450 451 452 453 454 455 |
# File 'app/controllers/collection_objects_controller.rb', line 444 def user_map { user_header_map: { 'otu' => 'otu_name', 'start_day' => 'start_date_day', 'start_month' => 'start_date_month', 'start_year' => 'start_date_year', 'end_day' => 'end_date_day', 'end_month' => 'end_date_month', 'end_year' => 'end_date_year'} } end |