Class: Queries::TaxonName::Filter

Inherits:
Query::Filter show all
Includes:
Concerns::Citations, Concerns::Confidences, Concerns::DataAttributes, Concerns::Depictions, Concerns::Notes, Concerns::Sounds, Concerns::Tags, Helpers
Defined in:
lib/queries/taxon_name/filter.rb

Constant Summary collapse

PARAMS = 
[
  :ancestors,
  :ancestrify,
  :author,
  :author_exact,
  :authors,
  :availability,
  :cached,
  :collecting_event_id,
  :collection_object_id,
  :combinations,
  :combinationify,
  :descendants,
  :descendants_max_depth,
  :epithet_only,
  :etymology,
  :latinized,
  :leaves,
  :name,
  :name_exact,
  :nomenclature_code,
  :nomenclature_date,
  :nomenclature_group, # !! different than autocomplete
  :not_specified,
  :original_combination,
  :otu_id,
  :otus,
  :rank,
  :relation_to_relationship,
  :sort,
  :taxon_name_relationship_target,
  :synonymify,
  :taxon_name_author_id_or,
  :taxon_name_id,
  :taxon_name_type,
  :type_metadata,
  :validify,
  :validity,
  :verbatim_author,
  :verbatim_name,
  :year,
  :year_end,
  :year_start,

  cached: [],
  collection_object_id: [],
  collecting_event_id: [],
  combination_taxon_name_id: [],
  name: [],
  otu_id: [],
  parent_id: [],
  rank: [],
  taxon_name_author_id: [],
  taxon_name_classification: [],
  taxon_name_id: [],
  taxon_name_relationship: [
    :subject_taxon_name_id,
    :object_taxon_name_id,
    :type,
  ],
  taxon_name_relationship_type_subject: [],
  taxon_name_relationship_type_object: [],
  taxon_name_relationship_type_either: [],
  type: [],
].freeze

Constants inherited from Query::Filter

Query::Filter::FILTER_QUERIES, Query::Filter::SUBQUERIES

Instance Attribute Summary collapse

Attributes inherited from Query::Filter

#anatomical_part_query, #api, #asserted_distribution_query, #biological_association_query, #biological_associations_graph_query, #collecting_event_query, #collection_object_query, #content_query, #controlled_vocabulary_term_query, #conveyance_query, #data_attribute_query, #depiction_query, #descriptor_query, #document_query, #dwc_occurrence_query, #extract_query, #field_occurrence_query, #image_query, #loan_query, #object_global_id, #observation_query, #order_by, #otu_query, #page, #paginate, #params, #per, #person_query, #project_id, #recent, #recent_target, #roll_call, #sound_query, #taxon_name_query, #taxon_name_relationship_query, #venn, #venn_ignore_pagination, #venn_mode

Attributes inherited from Query

#query_string, #terms

Instance Method Summary collapse

Methods included from Helpers

#boolean_param, #integer_param, #split_pairs, #split_repeated_pairs, #tri_value_array

Methods inherited from Query::Filter

#all_and_clauses, #all_merge_clauses, #annotator_and_clauses, #annotator_merge_clauses, annotator_params, api_except_params, api_excluded_params, #apply_venn, #attribute_exact_facet, base_filter, base_query_name, base_query_to_h, #deep_permit, #disable_paging, included_annotator_facets, instantiated_base_filter, inverted_subqueries, #object_global_id_facet, #only_project?, #only_project_or_less?, #paging_state, params, #permitted_params, #process_url_into_params, #project_id_facet, query_name, #set_nested_queries, #set_paging, set_paging, #shared_and_clauses, #subquery_vector, #target_and_clauses, #venn_query

Methods inherited from Query

#alphabetic_strings, #alphanumeric_strings, base_name, #base_name, #base_query, #build_terms, #end_wildcard, #levenshtein_distance, #match_ordered_wildcard_pieces_in_cached, #no_terms?, referenced_klass, #referenced_klass, #referenced_klass_except, #referenced_klass_intersection, #referenced_klass_union, #start_and_end_wildcard, #start_wildcard, #table, #wildcard_pieces

Constructor Details

#initialize(query_params) ⇒ Filter

Returns a new instance of Filter.

Parameters:

  • params (Params) —

    as permitted via controller



358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
 
# File 'lib/queries/taxon_name/filter.rb', line 358

def initialize(query_params)
  super

  @ancestors = boolean_param(params, :ancestors)
  @ancestrify = boolean_param(params, :ancestrify)
  @author = params[:author]
  @author_exact = boolean_param(params, :author_exact)
  @authors = boolean_param(params, :authors)
  @availability = boolean_param(params, :availability)
  @cached = params[:cached]
  @collecting_event_id = params[:collecting_event_id]
  @collection_object_id = params[:collection_object_id]
  @combination_taxon_name_id = params[:combination_taxon_name_id]
  @combinations = boolean_param(params, :combinations)
  @combinationify = boolean_param(params, :combinationify)
  @descendants = boolean_param(params, :descendants)
  @descendants_max_depth = params[:descendants_max_depth]
  @etymology = boolean_param(params, :etymology)
  @epithet_only = params[:epithet_only]
  @latinized = boolean_param(params, :latinized)
  @geo_json = params[:geo_json]
  @leaves = boolean_param(params, :leaves)
  @name = params[:name]
  @name_exact = boolean_param(params, :name_exact)
  @nomenclature_date = boolean_param(params, :nomenclature_date)
  @nomenclature_code = params[:nomenclature_code] if params[:nomenclature_code].present?
  @nomenclature_group = params[:nomenclature_group] if params[:nomenclature_group].present?
  @not_specified = boolean_param(params, :not_specified)
  @otu_id = params[:otu_id]
  @otus = boolean_param(params, :otus)
  @original_combination = boolean_param(params, :original_combination)
  @parent_id = params[:parent_id]
  @rank = params[:rank]
  @relation_to_relationship = params[:relation_to_relationship]
  @sort = params[:sort]
  @synonymify = boolean_param(params, :synonymify)
  @taxon_name_author_id = params[:taxon_name_author_id]
  @taxon_name_author_id_or = boolean_param(params, :taxon_name_author_id_or)
  @taxon_name_classification = params[:taxon_name_classification] || []
  @taxon_name_id = params[:taxon_name_id]
  @taxon_name_relationship = params[:taxon_name_relationship] || []
  @taxon_name_relationship_target = params[:taxon_name_relationship_target]
  @taxon_name_relationship_type_subject =
    params[:taxon_name_relationship_type_subject] || []
  @taxon_name_relationship_type_object =
    params[:taxon_name_relationship_type_object] || []
  @taxon_name_relationship_type_either =
    params[:taxon_name_relationship_type_either] || []
  @taxon_name_type = params[:taxon_name_type]
  @type_metadata = boolean_param(params, :type_metadata)
  @validify = boolean_param(params, :validify)
  @validity = boolean_param(params, :validity)
  @verbatim_author = params[:verbatim_author]
  @verbatim_name = boolean_param(params, :verbatim_name)

  @year = params[:year]
  @year_end = params[:year_end]
  @year_start = params[:year_start]

  set_confidences_params(params)
  set_citations_params(params)
  set_depiction_params(params)
  set_notes_params(params)
  set_data_attributes_params(params)
  set_tags_params(params)
end

Instance Attribute Details

#ancestors ⇒ Object

Returns Boolean Ignored when taxon_name_id.empty? Works as AND clause with descendants :(.

Parameters:

  • ancestors (Boolean, 'true', 'false', nil)

Returns:

  • Boolean Ignored when taxon_name_id.empty? Works as AND clause with descendants :(



83
84
85
 
# File 'lib/queries/taxon_name/filter.rb', line 83

def ancestors
  @ancestors
end

#ancestrify ⇒ Object

!! This parameter is not like the others, it is applied POST result, see also synonymify and validify, etc.

Parameters:

  • ancestrify (Boolean) —

    true - extend result to include all ancestors of names in the result along with the result false/nil - ignore



89
90
91
 
# File 'lib/queries/taxon_name/filter.rb', line 89

def ancestrify
  @ancestrify
end

#author ⇒ Object

Parameters:

  • author (String) —

    Use "&" for "and". Matches against cached_author_year. See also author_exact.



135
136
137
 
# File 'lib/queries/taxon_name/filter.rb', line 135

def author
  @author
end

#author_exact ⇒ Object

Returns Boolean.

Returns:

  • Boolean



138
139
140
 
# File 'lib/queries/taxon_name/filter.rb', line 138

def author_exact
  @author_exact
end

#authors ⇒ Object

['true' or 'false'] on initialize whether the name has an author string, from any source, provided

Parameters:

  • authors (Boolean, nil) 


275
276
277
 
# File 'lib/queries/taxon_name/filter.rb', line 275

def authors
  @authors
end

#availability ⇒ Object

['true' or 'false'] on initialize true if only available, false if only unavailable, nil if both



168
169
170
 
# File 'lib/queries/taxon_name/filter.rb', line 168

def availability
  @availability
end

#cached ⇒ Array

Returns of TaxonNames matching cached exactly.

Parameters:

  • cached (String, Array)

Returns:

  • (Array) —

    of TaxonNames matching cached exactly



131
132
133
 
# File 'lib/queries/taxon_name/filter.rb', line 131

def cached
  @cached
end

#collecting_event_id ⇒ Object

Returns Array.

Parameters:

  • collecting_event_id (String, Array)

Returns:

  • Array



119
120
121
 
# File 'lib/queries/taxon_name/filter.rb', line 119

def collecting_event_id
  @collecting_event_id
end

#collection_object_id ⇒ Object

Returns Array.

Parameters:

  • collection_object_id (String, Array)

Returns:

  • Array



98
99
100
 
# File 'lib/queries/taxon_name/filter.rb', line 98

def collection_object_id
  @collection_object_id
end

#combination_taxon_name_id ⇒ Array

Returns taxon_name_ids for which all Combinations will be returned.

Returns:

  • (Array) —

    taxon_name_ids for which all Combinations will be returned



334
335
336
 
# File 'lib/queries/taxon_name/filter.rb', line 334

def combination_taxon_name_id
  @combination_taxon_name_id
end

#combinationify ⇒ Object

!! This parameter is not like the others, it is applied POST result, see also synonymify and validify

Parameters:

  • combinationify (Boolean) —

    true - extend result to include all Combinations in which the finest name is a member of the result false/nil - ignore



111
112
113
 
# File 'lib/queries/taxon_name/filter.rb', line 111

def combinationify
  @combinationify
end

#combinations ⇒ Object

This parameter should be used along side species or genus group limits.

Parameters:

  • combinations (Boolean) —

    true - only return names that have (subsequent) Combinations false - only return names without (subequent) Combinations nil - ignore



105
106
107
 
# File 'lib/queries/taxon_name/filter.rb', line 105

def combinations
  @combinations
end

#descendants ⇒ Boolean

Returns true - only descendants NOT SELF false - self AND descendants nil - ignored Ignored when taxon_name_id.empty?.

Parameters:

  • descendants (Boolean, 'true', 'false', nil) —

    Read carefully! descendants = false is NOT no descendants, it's descendants and self

Returns:

  • (Boolean) —

    true - only descendants NOT SELF false - self AND descendants nil - ignored Ignored when taxon_name_id.empty?



205
206
207
 
# File 'lib/queries/taxon_name/filter.rb', line 205

def descendants
  @descendants
end

#descendants_max_depth ⇒ Integer?

A positive integer indicating how many levels deep of descendants to retrieve. Ignored when descentants is false/unspecified. Defaults to nil

Parameters:

  • descendants_max_depth (Integer)

Returns:

  • (Integer, nil) 


212
213
214
 
# File 'lib/queries/taxon_name/filter.rb', line 212

def descendants_max_depth
  @descendants_max_depth
end

#epithet_only ⇒ Object

Parameters:

  • epithet_only (Boolean) —

    true - use name property instead of cached to find taxon name false/nil - ignore



94
95
96
 
# File 'lib/queries/taxon_name/filter.rb', line 94

def epithet_only
  @epithet_only
end

#etymology ⇒ Object

['true' or 'false'] on initialize whether the name has etymology

Parameters:

  • etymology (Boolean, nil) 


270
271
272
 
# File 'lib/queries/taxon_name/filter.rb', line 270

def etymology
  @etymology
end

#geo_json ⇒ Object

Returns the value of attribute geo_json.



343
344
345
 
# File 'lib/queries/taxon_name/filter.rb', line 343

def geo_json
  @geo_json
end

#latinized ⇒ Boolean?

Returns &latinized=<"true"|"false"> if 'true' then return only genus group names with gender and species group names with part of speech if 'false' then return only genus group names without gender and species group names without part of speech if nil, ignore.

Returns:

  • (Boolean, nil) —

    &latinized=<"true"|"false"> if 'true' then return only genus group names with gender and species group names with part of speech if 'false' then return only genus group names without gender and species group names without part of speech if nil, ignore



312
313
314
 
# File 'lib/queries/taxon_name/filter.rb', line 312

def latinized
  @latinized
end

#leaves ⇒ Boolean?

TODO: inverse is duplicated in autocomplete

Returns:

  • (Boolean, nil) —

    &leaves=<"true"|"false"> if 'true' then return only names without descendents if 'false' then return only names with descendents



303
304
305
 
# File 'lib/queries/taxon_name/filter.rb', line 303

def leaves
  @leaves
end

#name ⇒ Array

Returns Matches against cached. See also name_exact.

Parameters:

  • name (String, Array)

Returns:

  • (Array) —

    Matches against cached. See also name_exact.



124
125
126
 
# File 'lib/queries/taxon_name/filter.rb', line 124

def name
  @name
end

#name_exact ⇒ Object

Returns Boolean.

Returns:

  • Boolean



127
128
129
 
# File 'lib/queries/taxon_name/filter.rb', line 127

def name_exact
  @name_exact
end

#nomenclature_code ⇒ String?

Returns accessor for attr :nomenclature_code, wrap with needed wildcards.

Returns:

  • (String, nil) —

    accessor for attr :nomenclature_code, wrap with needed wildcards



296
297
298
 
# File 'lib/queries/taxon_name/filter.rb', line 296

def nomenclature_code
  @nomenclature_code
end

#nomenclature_date ⇒ Object

Returns Boolean with/out cached nomenclature date set.

Parameters:

  • ancestors (Boolean, 'true', 'false', nil)

Returns:

  • Boolean with/out cached nomenclature date set



148
149
150
 
# File 'lib/queries/taxon_name/filter.rb', line 148

def nomenclature_date
  @nomenclature_date
end

#nomenclature_group ⇒ String?

Returns accessor for attr :nomenclature_group, wrap with needed wildcards.

Returns:

  • (String, nil) —

    accessor for attr :nomenclature_group, wrap with needed wildcards



292
293
294
 
# File 'lib/queries/taxon_name/filter.rb', line 292

def nomenclature_group
  @nomenclature_group
end

#not_specified ⇒ Object

Returns the value of attribute not_specified.



287
288
289
 
# File 'lib/queries/taxon_name/filter.rb', line 287

def not_specified
  @not_specified
end

#original_combination ⇒ Boolean?

Returns true - name has at least one element of original combination false - name has no element of original combination nil - ignored.

Parameters:

  • original_combination (Boolean)

Returns:

  • (Boolean, nil) —

    true - name has at least one element of original combination false - name has no element of original combination nil - ignored



255
256
257
 
# File 'lib/queries/taxon_name/filter.rb', line 255

def original_combination
  @original_combination
end

#otu_id ⇒ Array?

Returns one or more OTU ids.

Parameters:

  • otu_id (Array, nil)

Returns:

  • (Array, nil) —

    one or more OTU ids



260
261
262
 
# File 'lib/queries/taxon_name/filter.rb', line 260

def otu_id
  @otu_id
end

#otus ⇒ Object

['true' or 'false'] on initialize whether the name has an Otu

Parameters:

  • otus (Boolean, nil) 


265
266
267
 
# File 'lib/queries/taxon_name/filter.rb', line 265

def otus
  @otus
end

#parent_id ⇒ Object

Return the taxon names with this/these parent_ids

Returns:

  • Return the taxon names with this/these parent_ids



196
197
198
 
# File 'lib/queries/taxon_name/filter.rb', line 196

def parent_id
  @parent_id
end

#rank ⇒ Array

Returns:

  • (Array) 


341
342
343
 
# File 'lib/queries/taxon_name/filter.rb', line 341

def rank
  @rank
end

#relation_to_relationship ⇒ String?

Returns &relation_to_relationship=<subject|object|either> All names that are subject|object|either of any relationship.

Returns:

  • (String, nil) —

    &relation_to_relationship=<subject|object|either> All names that are subject|object|either of any relationship



244
245
246
 
# File 'lib/queries/taxon_name/filter.rb', line 244

def relation_to_relationship
  @relation_to_relationship
end

#sort ⇒ String?

Parameters:

  • sort (String, nil) —

    one of :classification, :alphabetical

Returns:

  • (String, nil) 


330
331
332
 
# File 'lib/queries/taxon_name/filter.rb', line 330

def sort
  @sort
end

#synonymify ⇒ Object

!! This parameter is not like the others, it is applied POST result, see also combinationify and validify

Parameters:

  • synonymify (Boolean) —

    true - extend result to include all Synonyms of any member of the list false/nil - ignore



218
219
220
 
# File 'lib/queries/taxon_name/filter.rb', line 218

def synonymify
  @synonymify
end

#taxon_name_author_id ⇒ Array

Returns:

  • (Array) 


319
320
321
 
# File 'lib/queries/taxon_name/filter.rb', line 319

def taxon_name_author_id
  @taxon_name_author_id
end

#taxon_name_author_id_or ⇒ Boolean

Parameters:

  • `false`, (String) —

    nil - treat the ids in taxon_name_author_id as "or" (match any TaxonName with any of these authors) 'true' - treat the ids in taxon_name_author_id as "and" (only TaxonNames with all and only all will match)

Returns:

  • (Boolean) 


325
326
327
 
# File 'lib/queries/taxon_name/filter.rb', line 325

def taxon_name_author_id_or
  @taxon_name_author_id_or
end

#taxon_name_classification ⇒ Object

Parameters:

  • taxon_name_classification (Array) —

    Class names of TaxonNameClassification, as strings.



248
249
250
 
# File 'lib/queries/taxon_name/filter.rb', line 248

def taxon_name_classification
  @taxon_name_classification
end

#taxon_name_id ⇒ Object

Return the taxon name(s) with this/these ids

Returns:

  • Return the taxon name(s) with this/these ids



190
191
192
 
# File 'lib/queries/taxon_name/filter.rb', line 190

def taxon_name_id
  @taxon_name_id
end

#taxon_name_relationship ⇒ Object

Each entry must have a 'type' Each entry must have one (and only one) of 'subject_taxon_name_id' or 'object_taxon_name_id'

Return all taxon names in a relationship of a given type and in relation to a another name. For example, return all synonyms of Aus bus.

Parameters:

  • taxon_name_relationship (Array) —

    [ { 'type' => 'TaxonNameRelationship::<>', 'subject|object_taxon_name_id' => '123' } ... {} ]



226
227
228
 
# File 'lib/queries/taxon_name/filter.rb', line 226

def taxon_name_relationship
  @taxon_name_relationship
end

#taxon_name_relationship_target ⇒ Boolean

Applies only to taxon_name_relationship_query_facet, is only present in queries sent from Filter TaxonNameRelationship.

Parameters:

  • taxon_name_relationship_target (Boolean)

Returns:

  • (Boolean) —
    • 'subject': only return subjects of relationships from taxon_name_relationship_query_facet
    • 'object': only return objects of relationships from taxon_name_relationship_query_facet
    • nil: return both subjects and objects


354
355
356
 
# File 'lib/queries/taxon_name/filter.rb', line 354

def taxon_name_relationship_target
  @taxon_name_relationship_target
end

#taxon_name_relationship_type_either ⇒ Object

Parameters:

  • taxon_name_relationship_type_either (Array) —

    All names involved in any of these relationships as either subject or object



239
240
241
 
# File 'lib/queries/taxon_name/filter.rb', line 239

def taxon_name_relationship_type_either
  @taxon_name_relationship_type_either
end

#taxon_name_relationship_type_object ⇒ Object

Parameters:

  • taxon_name_relationship_type_object (Array) —

    All names involved in any of these relationships as object



234
235
236
 
# File 'lib/queries/taxon_name/filter.rb', line 234

def taxon_name_relationship_type_object
  @taxon_name_relationship_type_object
end

#taxon_name_relationship_type_subject ⇒ Object

Parameters:

  • taxon_name_relationship_type_subject (Array) —

    All names involved in any of these relationships as subject



230
231
232
 
# File 'lib/queries/taxon_name/filter.rb', line 230

def taxon_name_relationship_type_subject
  @taxon_name_relationship_type_subject
end

#taxon_name_type ⇒ String?

Returns &taxon_name_type=<Protonym|Combination|Hybrid>.

Returns:

  • (String, nil) —

    &taxon_name_type=<Protonym|Combination|Hybrid>



316
317
318
 
# File 'lib/queries/taxon_name/filter.rb', line 316

def taxon_name_type
  @taxon_name_type
end

#type_metadata ⇒ Object

['true' or 'false'] on initialize whether the name has TypeMaterial



280
281
282
 
# File 'lib/queries/taxon_name/filter.rb', line 280

def type_metadata
  @type_metadata
end

#validify ⇒ Object

name is returned !! This param is not like the others. !!

Returns:

  • Boolean if true then for each name in the result its valid



175
176
177
 
# File 'lib/queries/taxon_name/filter.rb', line 175

def validify
  @validify
end

#validity ⇒ Object

['true' or 'false'] on initialize true if only valid, false if only invalid, nil if both



163
164
165
 
# File 'lib/queries/taxon_name/filter.rb', line 163

def validity
  @validity
end

#verbatim_author ⇒ Object

Parameters:

  • verbatim_author (String) —

    Exact match against verbatim_author.



179
180
181
 
# File 'lib/queries/taxon_name/filter.rb', line 179

def verbatim_author
  @verbatim_author
end

#verbatim_name ⇒ Object

Returns Boolean if true then verbatim_name is populated.

Returns:

  • Boolean if true then verbatim_name is populated



184
185
186
 
# File 'lib/queries/taxon_name/filter.rb', line 184

def verbatim_name
  @verbatim_name
end

#year ⇒ Object

Matches against cached_author_year.

Parameters:

  • year (String) —

    "yyyy"



143
144
145
 
# File 'lib/queries/taxon_name/filter.rb', line 143

def year
  @year
end

#year_end ⇒ Object

Matches against cached_nomenclature_date

Parameters:

  • year_end (String) —

    "yyyy"



158
159
160
 
# File 'lib/queries/taxon_name/filter.rb', line 158

def year_end
  @year_end
end

#year_start ⇒ Object

Matches against cached_nomenclature_date

Parameters:

  • year_start (String) —

    "yyyy"



153
154
155
 
# File 'lib/queries/taxon_name/filter.rb', line 153

def year_start
  @year_start
end

Instance Method Details

#all(nil_empty = false) ⇒ ActiveRecord::Relation

Returns:

  • (ActiveRecord::Relation) 


1143
1144
1145
1146
1147
1148
1149
1150
1151
1152
1153
1154
1155
1156
1157
1158
1159
1160
1161
1162
1163
1164
1165
1166
 
# File 'lib/queries/taxon_name/filter.rb', line 1143

def all(nil_empty = false)
  # Everything below subqueries on q in some way, so q can't have paging
  # enabled.
  paging_state = disable_paging
  q = super

  # Order matters, use this first to go up
  q = ancestrify_result(q) if ancestrify

  # Then out in various ways
  q = validify_result(q) if validify
  q = combinationify_result(q) if combinationify
  q = synonimify_result(q) if synonymify

  # Then sort
  if sort
    q = order_clause(q)
    paging_state[:ordered] = true
  end

  q = self.class.set_paging(q, paging_state)

  q
end

#ancestor_facet ⇒ Object

A merge facet.

Returns:

  • Scope match only names that are a ancestor of some taxon_name_id



568
569
570
571
572
573
574
575
576
577
578
 
# File 'lib/queries/taxon_name/filter.rb', line 568

def ancestor_facet
  return nil if taxon_name_id.empty? || !(ancestors == true)

  ancestors_subquery = ::TaxonNameHierarchy.where(
    ::TaxonNameHierarchy.arel_table[:ancestor_id].eq(::TaxonName.arel_table[:id]).and(
      ::TaxonNameHierarchy.arel_table[:descendant_id].in(taxon_name_id)
    )
  )

  ::TaxonName.where(ancestors_subquery.arel.exists)
end

#ancestrify_result(q) ⇒ Object 



1112
1113
1114
1115
1116
1117
1118
1119
1120
1121
1122
 
# File 'lib/queries/taxon_name/filter.rb', line 1112

def ancestrify_result(q)
  s = ::TaxonName
     .with(tn_q4: q)
    .joins('JOIN taxon_name_hierarchies tnh on tnh.ancestor_id = taxon_names.id')
    .joins('JOIN tn_q4 ON tn_q4.id = tnh.descendant_id')
    .distinct
    .to_sql

  # !! Do not use .distinct here
  ::TaxonName.from('(' + s + ') as taxon_names')
end

#and_clauses ⇒ ActiveRecord::Relation

Returns:

  • (ActiveRecord::Relation) 


1016
1017
1018
1019
1020
1021
1022
1023
1024
1025
1026
1027
1028
1029
1030
1031
1032
1033
 
# File 'lib/queries/taxon_name/filter.rb', line 1016

def and_clauses
  [
    nomenclature_date_facet,
    author_facet,
    cached_facet,
    name_facet,
    parent_id_facet,
    rank_facet,
    taxon_name_type_facet,
    validity_facet,
    availability_facet,
    verbatim_author_facet,
    verbatim_name_facet,
    with_nomenclature_code,
    with_nomenclature_group,
    year_facet,
  ]
end

#asserted_distribution_query_facet ⇒ Object 



939
940
941
942
943
944
945
946
947
948
 
# File 'lib/queries/taxon_name/filter.rb', line 939

def asserted_distribution_query_facet
  return nil if asserted_distribution_query.nil?
  s = 'WITH query_ad_tn AS (' + asserted_distribution_query.all.to_sql + ') ' +
      ::TaxonName
        .joins(:otus)
        .joins("JOIN query_ad_tn ON query_ad_tn.asserted_distribution_object_id = otus.id AND query_ad_tn.asserted_distribution_object_type = 'Otu'")
        .to_sql

  ::TaxonName.from('(' + s + ') as taxon_names').distinct
end

#author_facet ⇒ Object 



837
838
839
840
841
842
843
844
 
# File 'lib/queries/taxon_name/filter.rb', line 837

def author_facet
  return nil if author.blank?
  if author_exact
    table[:cached_author].eq(author.strip)
  else
    table[:cached_author].matches('%' + author.strip.gsub(/\s/, '%') + '%')
  end
end

#authors_facet ⇒ Object

This is not true! It includes records that are year only.

Returns:

  • Scope



592
593
594
595
596
597
 
# File 'lib/queries/taxon_name/filter.rb', line 592

def authors_facet
  return nil if authors.nil?
  authors ?
    ::TaxonName.where.not(cached_author_year: nil) :
    ::TaxonName.where(cached_author_year: nil)
end

#availability_facet ⇒ Object 



869
870
871
872
873
874
875
876
 
# File 'lib/queries/taxon_name/filter.rb', line 869

def availability_facet
  return nil if availability.nil?
  if availability
    table[:cached_is_available].eq(true)
  else
    table[:cached_is_available].eq(false)
  end
end

#biological_association_query_facet ⇒ Object 



972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
 
# File 'lib/queries/taxon_name/filter.rb', line 972

def biological_association_query_facet
  return nil if biological_association_query.nil?
  s = 'WITH query_tn_ba AS (' + biological_association_query.all.to_sql + ') '

  a = ::TaxonName
    .joins(:otus)
    .joins("JOIN query_tn_ba as query_tn_ba1 on query_tn_ba1.biological_association_subject_id = otus.id AND query_tn_ba1.biological_association_subject_type = 'Otu'").to_sql

  b = ::TaxonName
    .joins(:otus)
    .joins("JOIN query_tn_ba as query_tn_ba2 on query_tn_ba2.biological_association_object_id = otus.id AND query_tn_ba2.biological_association_object_type = 'Otu'").to_sql

  s << ::TaxonName.from("((#{a}) UNION (#{b})) as taxon_names").to_sql

  ::TaxonName.from('(' + s + ') as taxon_names')
end

#cached_facet ⇒ Object 



827
828
829
830
 
# File 'lib/queries/taxon_name/filter.rb', line 827

def cached_facet
  return nil if cached.empty?
  table[:cached].in(cached)
end

#collecting_event_id_facet ⇒ Object 



903
904
905
906
907
908
 
# File 'lib/queries/taxon_name/filter.rb', line 903

def collecting_event_id_facet
  return nil if collecting_event_id.empty?
  ::TaxonName
    .joins(:collection_objects)
    .where(collection_objects: { collecting_event_id: })
end

#collecting_event_query_facet ⇒ Object 



961
962
963
964
965
966
967
968
969
970
 
# File 'lib/queries/taxon_name/filter.rb', line 961

def collecting_event_query_facet
  return nil if collecting_event_query.nil?
  s = 'WITH query_ce_tns AS (' + collecting_event_query.all.to_sql + ') ' +
      ::TaxonName
        .joins(:collection_objects)
        .joins('JOIN query_ce_tns as query_ce_tns1 on collection_objects.collecting_event_id = query_ce_tns1.id')
        .to_sql

  ::TaxonName.from('(' + s + ') as taxon_names').distinct
end

#collection_object_id_facet ⇒ Object 



580
581
582
583
 
# File 'lib/queries/taxon_name/filter.rb', line 580

def collection_object_id_facet
  return nil if collection_object_id.empty?
  ::TaxonName.joins(:collection_objects).where(collection_objects: { id: collection_object_id })
end

#collection_object_query_facet ⇒ Object 



950
951
952
953
954
955
956
957
958
959
 
# File 'lib/queries/taxon_name/filter.rb', line 950

def collection_object_query_facet
  return nil if collection_object_query.nil?
  s = 'WITH query_collection_objects AS (' + collection_object_query.all.to_sql + ') ' +
      ::TaxonName
        .joins(:collection_objects)
        .joins('JOIN query_collection_objects as query_collection_objects1 on collection_objects.id = query_collection_objects1.id')
        .to_sql

  ::TaxonName.from('(' + s + ') as taxon_names').distinct
end

#combination_taxon_name_id_facet ⇒ Object 



892
893
894
895
896
897
898
899
900
901
 
# File 'lib/queries/taxon_name/filter.rb', line 892

def combination_taxon_name_id_facet
  return nil if combination_taxon_name_id.empty?
  ::Combination.joins(:related_taxon_name_relationships)
    .where(
      taxon_name_relationships: {
        type: ::TAXON_NAME_RELATIONSHIP_COMBINATION_TYPES.values,
        subject_taxon_name_id: combination_taxon_name_id,
      },
    ).distinct
end

#combinationify_result(q) ⇒ Object 



1100
1101
1102
1103
1104
1105
1106
1107
1108
1109
1110
 
# File 'lib/queries/taxon_name/filter.rb', line 1100

def combinationify_result(q)
  s = ::TaxonName
    .with(tn_q3: q)
    .joins('JOIN tn_q3 ON tn_q3.id = taxon_names.cached_valid_taxon_name_id')
    .where("taxon_names.type = 'Combination'")
    .to_sql

  a = ::TaxonName.from('(' + s + ') as taxon_names').distinct

  referenced_klass_union([q, a])
end

#combinations_facet ⇒ Object 



910
911
912
913
914
915
916
917
918
 
# File 'lib/queries/taxon_name/filter.rb', line 910

def combinations_facet
  return nil if combinations.nil?
  a = ::Protonym.joins(:combination_relationships)
  if combinations
    a
  else
    referenced_klass_except(a)
  end
end

#descendant_facet ⇒ Object

Returns Scope match only names that are a descendant of some taxon_name_id.

Returns:

  • Scope match only names that are a descendant of some taxon_name_id



538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
 
# File 'lib/queries/taxon_name/filter.rb', line 538

def descendant_facet
  return nil if taxon_name_id.empty? || descendants.nil?

  h = ::TaxonNameHierarchy.arel_table

  if descendants
    descendants_subquery = ::TaxonNameHierarchy.where(
      h[:descendant_id].eq(::TaxonName.arel_table[:id]).and(
        h[:ancestor_id].in(taxon_name_id)
      )
    ).where(h[:ancestor_id].not_eq(h[:descendant_id]))

    if descendants_max_depth.present?
      descendants_subquery = descendants_subquery.where(::TaxonNameHierarchy.arel_table[:generations].lteq(descendants_max_depth.to_i))
    end

    ::TaxonName.where(descendants_subquery.arel.exists)
  else
    q = ::TaxonName.joins('JOIN taxon_name_hierarchies ON taxon_name_hierarchies.descendant_id = taxon_names.id')
      .where(taxon_name_hierarchies: {ancestor_id: taxon_name_id})
     if descendants_max_depth.present?
       q = q.where(::TaxonNameHierarchy.arel_table[:generations].lteq(descendants_max_depth.to_i))
     end
     q
  end
end

#geo_json_facet ⇒ Object 



494
495
496
497
498
499
500
501
502
503
 
# File 'lib/queries/taxon_name/filter.rb', line 494

def geo_json_facet
  return nil if geo_json.nil?
  otus = ::Queries::Otu::Filter.new(geo_json:).all
  collection_objects = ::Queries::CollectionObject::Filter.new(geo_json:).all

  a = ::TaxonName.joins(:taxon_taxon_determinations).where(taxon_determinations: { taxon_determination_object: collection_objects })
  b = ::TaxonName.joins(:otus).where(otus:)

  ::TaxonName.from("((#{a.to_sql}) UNION (#{b.to_sql})) as taxon_names")
end

#latinized_facet ⇒ Object

Returns Scope.

Returns:

  • Scope



647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
 
# File 'lib/queries/taxon_name/filter.rb', line 647

def latinized_facet
  return nil if latinized.nil?

  tnc = ::TaxonNameClassification.arel_table
  if latinized == true
    # Note the query here does not restrict to genus/species groups - a
    # genus whose rank is changed to subfamily can retain its gender,
    # e.g., and we want to include those here.
    ::TaxonName.where(
      ::TaxonNameClassification.where(
        tnc[:taxon_name_id].eq(table[:id]).and(
          tnc[:type].in(LATINIZED_TAXON_NAME_CLASSIFICATION_NAMES)
        )
      ).arel.exists
    )
  else
    ::TaxonName
      .where(
        table[:rank_class].in(GENUS_AND_SPECIES_RANK_NAMES)
      )
      .where.not(
        ::TaxonNameClassification.where(
          tnc[:taxon_name_id].eq(table[:id]).and(
            tnc[:type].in(LATINIZED_TAXON_NAME_CLASSIFICATION_NAMES)
          )
        ).arel.exists
      )
  end
end

#leaves_facet ⇒ Object

Returns Scope.

Returns:

  • Scope



641
642
643
644
 
# File 'lib/queries/taxon_name/filter.rb', line 641

def leaves_facet
  return nil if leaves.nil?
  leaves ? ::TaxonName.leaves : ::TaxonName.not_leaves
end

#merge_clauses ⇒ Object 



1035
1036
1037
1038
1039
1040
1041
1042
1043
1044
1045
1046
1047
1048
1049
1050
1051
1052
1053
1054
1055
1056
1057
1058
1059
1060
1061
1062
1063
1064
1065
1066
1067
1068
1069
1070
1071
1072
 
# File 'lib/queries/taxon_name/filter.rb', line 1035

def merge_clauses
  clauses = [
    asserted_distribution_query_facet,
    biological_association_query_facet,
    collecting_event_query_facet,
    collection_object_query_facet,
    otu_query_facet,
    sound_query_facet,
    taxon_name_relationship_query_facet,

    ancestor_facet,
    authors_facet,
    collecting_event_id_facet,
    collection_object_id_facet,
    combination_taxon_name_id_facet,
    combinations_facet,
    descendant_facet,
    latinized_facet,
    leaves_facet,
    not_specified_facet,
    original_combination_facet,
    otu_id_facet,
    otus_facet,
    relation_to_relationship_facet,
    taxon_name_author_id_facet,
    taxon_name_classification_facet,
    taxon_name_relationship_type_facet,
    type_metadata_facet,
    with_etymology_facet,
    year_range_facet,
  ]

  taxon_name_relationship.each do |hsh|
    clauses << taxon_name_relationship_facet(hsh)
  end

  clauses.compact
end

#model_id_facet ⇒ Object

Overrides base class



1075
1076
1077
1078
 
# File 'lib/queries/taxon_name/filter.rb', line 1075

def model_id_facet
  return nil if taxon_name_id.empty? || !descendants.nil? || ancestors
  table[:id].in(taxon_name_id)
end

#name_facet ⇒ Object 



809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
 
# File 'lib/queries/taxon_name/filter.rb', line 809

def name_facet
  return nil if name.empty?
  if name_exact
    if (epithet_only)
      table[:name].in(name)
    else
      table[:cached].in(name).or(table[:cached_original_combination].in(name))
    end
    #  table[:cached].eq(name.strip).or(table[:cached_original_combination].eq(name.strip))
  else
    if (epithet_only)
      table[:name].matches_any(name.collect { |n| '%' + n.gsub(/\s+/, '%') + '%' })
    else
      table[:cached].matches_any(name.collect { |n| '%' + n.gsub(/\s+/, '%') + '%' }).or(table[:cached_original_combination].matches_any(name.collect { |n| '%' + n.gsub(/\s+/, '%') + '%' }))
    end
  end
end

#nomenclature_date_facet ⇒ Object 



527
528
529
530
531
532
533
534
 
# File 'lib/queries/taxon_name/filter.rb', line 527

def nomenclature_date_facet
  return nil if nomenclature_date.nil?
  if nomenclature_date
    table[:cached_nomenclature_date].not_eq(nil)
  else
    table[:cached_nomenclature_date].eq(nil)
  end
end

#not_specified_facet ⇒ Object 



505
506
507
508
509
510
511
512
513
514
515
516
 
# File 'lib/queries/taxon_name/filter.rb', line 505

def not_specified_facet
  return nil if not_specified.nil?
  if not_specified
    ::TaxonName.where(table[:cached].matches('%NOT SPECIFIED%').or(
      table[:cached_original_combination].matches('%NOT SPECIFIED%')
    ))
  else
    ::TaxonName.where(table[:cached].does_not_match('%NOT SPECIFIED%').and(
      table[:cached_original_combination].does_not_match('%NOT SPECIFIED%')
    ))
  end
end

#order_clause(query) ⇒ Object 



1124
1125
1126
1127
1128
1129
1130
1131
1132
1133
1134
1135
1136
1137
1138
1139
1140
 
# File 'lib/queries/taxon_name/filter.rb', line 1124

def order_clause(query)
  case sort
  when 'alphabetical'
    ::TaxonName.select('*').from(
      query.order('taxon_names.cached'), :inner_query
    )
  when 'classification'
    ::TaxonName.select('*').from(
      query
        .joins('INNER JOIN taxon_name_hierarchies ON taxon_names.id = taxon_name_hierarchies.descendant_id')
        .order('taxon_name_hierarchies.generations, taxon_name_hierarchies.ancestor_id, taxon_names.cached'),
      :inner_query
    )
  else
    query
  end
end

#original_combination_facet ⇒ Object 



518
519
520
521
522
523
524
525
 
# File 'lib/queries/taxon_name/filter.rb', line 518

def original_combination_facet
  return nil if original_combination.nil?
  if original_combination
    ::Protonym.joins(:original_combination_relationships).distinct
  else
    ::Protonym.left_joins(:original_combination_relationships).where(taxon_name_relationships: {id: nil})
  end
end

#otu_id_facet ⇒ Object 



585
586
587
588
 
# File 'lib/queries/taxon_name/filter.rb', line 585

def otu_id_facet
  return nil if otu_id.empty?
  ::TaxonName.joins(:otus).where(otus: { id: otu_id })
end

#otu_query_facet ⇒ Object 



920
921
922
923
924
925
926
927
928
929
 
# File 'lib/queries/taxon_name/filter.rb', line 920

def otu_query_facet
  return nil if otu_query.nil?
  s = 'WITH query_otu_tn AS (' + otu_query.all.to_sql + ') ' +
      ::TaxonName
        .joins(:otus)
        .joins('JOIN query_otu_tn as query_otu_tn1 on otus.id = query_otu_tn1.id') # Don't change, see `validify`
        .to_sql

  ::TaxonName.from('(' + s + ') as taxon_names').distinct
end

#otus_facet ⇒ Object

Returns Scope.

Returns:

  • Scope



778
779
780
781
782
 
# File 'lib/queries/taxon_name/filter.rb', line 778

def otus_facet
  return nil if otus.nil?
  subquery = ::Otu.where(::Otu.arel_table[:taxon_name_id].eq(::TaxonName.arel_table[:id])).arel.exists
  ::TaxonName.where(otus ? subquery : subquery.not)
end

#parent_id_facet ⇒ Object 



832
833
834
835
 
# File 'lib/queries/taxon_name/filter.rb', line 832

def parent_id_facet
  return nil if parent_id.empty?
  table[:parent_id].in(parent_id)
end

#rank_facet ⇒ Arel::Nodes::Grouping?

Returns:

  • (Arel::Nodes::Grouping, nil) 


791
792
793
794
795
796
 
# File 'lib/queries/taxon_name/filter.rb', line 791

def rank_facet
  return nil if rank.blank?
  # We don't wildcard end so that we can isolate to specific ranks and below
  r = rank.collect { |i| "%#{i}" }
  table[:rank_class].matches_any(r)
end

#relation_to_relationship_facet ⇒ Object

Returns Scope.

Returns:

  • Scope



696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
 
# File 'lib/queries/taxon_name/filter.rb', line 696

def relation_to_relationship_facet
  return nil if relation_to_relationship.nil?

  if relation_to_relationship == 'subject'
    ::TaxonName.with_taxon_name_relationships_as_subject.distinct
  elsif relation_to_relationship == 'object'
    ::TaxonName.with_taxon_name_relationships_as_object.distinct
  else
    # 3-4x more time-performant than using
    # :with_taxon_name_relationships.distinct
    ::TaxonName.joins('join taxon_name_relationships ON ' \
      'taxon_names.id = taxon_name_relationships.subject_taxon_name_id OR ' \
      'taxon_names.id = taxon_name_relationships.object_taxon_name_id'
    ).distinct
  end
end

#sound_query_facet ⇒ Object 



931
932
933
934
935
936
937
 
# File 'lib/queries/taxon_name/filter.rb', line 931

def sound_query_facet
  return nil if sound_query.nil?
  otus = otus_from_sound_query
  return nil if otus.nil?

  ::TaxonName.joins(:otus).where(otus: {id: otus.select(:id)}).distinct
end

#synonimify_result(q) ⇒ Object 



1089
1090
1091
1092
1093
1094
1095
1096
1097
1098
 
# File 'lib/queries/taxon_name/filter.rb', line 1089

def synonimify_result(q)
  s = ::TaxonName
    .with(tn_q2: q)
    .joins('JOIN tn_q2 ON tn_q2.id = taxon_names.cached_valid_taxon_name_id')
    .to_sql

  a = ::TaxonName.from('(' + s + ') as taxon_names').distinct

  referenced_klass_union([q, a])
end

#taxon_name_author_id_facet ⇒ Object 



726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
 
# File 'lib/queries/taxon_name/filter.rb', line 726

def taxon_name_author_id_facet
  return nil if taxon_name_author_id.empty?
  o = table
  r = ::Role.arel_table

  a = o.alias('a_')
  b = o.project(a[Arel.star]).from(a)

  c = r.alias('r1')

  b = b.join(c, Arel::Nodes::OuterJoin)
    .on(
      a[:id].eq(c[:role_object_id])
        .and(c[:role_object_type].eq('TaxonName'))
        .and(c[:type].eq('TaxonNameAuthor'))
    )

  e = c[:id].not_eq(nil)
  f = c[:person_id].in(taxon_name_author_id)

  b = b.where(e.and(f))
  b = b.group(a['id'])
  b = b.having(a['id'].count.eq(taxon_name_author_id.length)) unless taxon_name_author_id_or
  b = b.as('tn_z1_')

  ::TaxonName.joins(Arel::Nodes::InnerJoin.new(b, Arel::Nodes::On.new(b['id'].eq(o['id']))))
end

#taxon_name_classification_facet ⇒ Object

Returns Scope.

Returns:

  • Scope



714
715
716
717
718
719
720
721
722
723
724
 
# File 'lib/queries/taxon_name/filter.rb', line 714

def taxon_name_classification_facet
  return nil if taxon_name_classification.empty?

  ::TaxonName.where(
    ::TaxonNameClassification.where(
      ::TaxonNameClassification.arel_table[:taxon_name_id].eq(::TaxonName.arel_table[:id]).and(
        ::TaxonNameClassification.arel_table[:type].in(taxon_name_classification)
      )
    ).arel.exists
  )
end

#taxon_name_relationship_facet(hsh) ⇒ Object

Returns Scope wrapped in descendant_facet!.

Returns:

  • Scope wrapped in descendant_facet!



679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
 
# File 'lib/queries/taxon_name/filter.rb', line 679

def taxon_name_relationship_facet(hsh)
  hsh = hsh.symbolize_keys
  param_key = hsh[:subject_taxon_name_id] ? :subject_taxon_name_id : :object_taxon_name_id
  join_key = hsh[:subject_taxon_name_id] ? :object_taxon_name_id : :subject_taxon_name_id

  ::TaxonName.where(
    ::TaxonNameRelationship.where(
      ::TaxonNameRelationship.arel_table[join_key].eq(::TaxonName.arel_table[:id]).and(
        ::TaxonNameRelationship.arel_table[param_key].eq(hsh[param_key])
      ).and(
        ::TaxonNameRelationship.arel_table[:type].eq(hsh[:type])
      )
    ).arel.exists
  )
end

#taxon_name_relationship_query_facet ⇒ Object 



989
990
991
992
993
994
995
996
997
998
999
1000
1001
1002
1003
1004
1005
1006
1007
1008
1009
1010
1011
1012
1013
 
# File 'lib/queries/taxon_name/filter.rb', line 989

def taxon_name_relationship_query_facet
  return nil if taxon_name_relationship_query.nil?

  a = nil
  b = nil
  if taxon_name_relationship_target == 'subject' ||
     taxon_name_relationship_target.nil?
    a = ::TaxonName
      .with(tnr_query: taxon_name_relationship_query.all)
      .joins(:taxon_name_relationships)
      .where('taxon_name_relationships.id IN (SELECT id FROM tnr_query)')
      .distinct
  end

  if taxon_name_relationship_target == 'object' ||
     taxon_name_relationship_target.nil?
    b = ::TaxonName
      .with(tnr_query: taxon_name_relationship_query.all)
      .joins(:related_taxon_name_relationships)
      .where('taxon_name_relationships.id IN (SELECT id FROM tnr_query)')
      .distinct
  end

  referenced_klass_union([a,b])
end

#taxon_name_relationship_type_facet ⇒ Object

Returns Scope.

Returns:

  • Scope



608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
 
# File 'lib/queries/taxon_name/filter.rb', line 608

def taxon_name_relationship_type_facet
  if taxon_name_relationship_type_subject.empty? &&
     taxon_name_relationship_type_object.empty? &&
     taxon_name_relationship_type_either.empty?
    return nil
  end

  s = nil
  o = nil
  e = nil

  if taxon_name_relationship_type_subject.present?
    s = ::TaxonName.as_subject_with_taxon_name_relationship(
      taxon_name_relationship_type_subject
    ).distinct
  end

  if taxon_name_relationship_type_object.present?
    o = ::TaxonName.as_object_with_taxon_name_relationship(
      taxon_name_relationship_type_object
    ).distinct
  end

  if taxon_name_relationship_type_either.present?
    e = ::TaxonName.with_taxon_name_relationship(
      taxon_name_relationship_type_either
    )
  end

  referenced_klass_union([s, o, e])
end

#taxon_name_type_facet ⇒ Object 



804
805
806
807
 
# File 'lib/queries/taxon_name/filter.rb', line 804

def taxon_name_type_facet
  return nil if taxon_name_type.blank?
  table[:type].eq(taxon_name_type)
end

#type_metadata_facet ⇒ Object

Returns Scope.

Returns:

  • Scope



755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
 
# File 'lib/queries/taxon_name/filter.rb', line 755

def type_metadata_facet
  return nil if type_metadata.nil?

  # Species type information is stored in TypeMaterial
  type_material_exists = ::TypeMaterial
    .where(::TypeMaterial.arel_table[:protonym_id].eq(::TaxonName.arel_table[:id]))
    .arel.exists

  # Genus type species and family type genus are stored as Typification relationships
  # where the taxon name is the object (the name that has the type designation)
  typification_rel_exists = ::TaxonNameRelationship
    .where(::TaxonNameRelationship.arel_table[:object_taxon_name_id].eq(::TaxonName.arel_table[:id]))
    .where("taxon_name_relationships.type LIKE 'TaxonNameRelationship::Typification::%'")
    .arel.exists

  if type_metadata
    ::TaxonName.where(type_material_exists.or(typification_rel_exists))
  else
    ::TaxonName.where(type_material_exists.not.and(typification_rel_exists.not))
  end
end

#validify_result(q) ⇒ Object 



1080
1081
1082
1083
1084
1085
1086
1087
 
# File 'lib/queries/taxon_name/filter.rb', line 1080

def validify_result(q)
  s = ::TaxonName
    .with(tn_q1: q)
    .joins('JOIN tn_q1 ON tn_q1.cached_valid_taxon_name_id = taxon_names.id')
    .to_sql

  ::TaxonName.from('(' + s + ') as taxon_names').distinct
end

#validity_facet ⇒ Object 



860
861
862
863
864
865
866
867
 
# File 'lib/queries/taxon_name/filter.rb', line 860

def validity_facet
  return nil if validity.nil?
  if validity
    table[:cached_is_valid].eq(true)
  else
    table[:cached_is_valid].eq(false)
  end
end

#verbatim_author_facet ⇒ Object 



878
879
880
881
 
# File 'lib/queries/taxon_name/filter.rb', line 878

def verbatim_author_facet
  return nil if verbatim_author.blank?
  table[:verbatim_author].eq(verbatim_author)
end

#verbatim_name_facet ⇒ Object 



883
884
885
886
887
888
889
890
 
# File 'lib/queries/taxon_name/filter.rb', line 883

def verbatim_name_facet
  return nil if verbatim_name.nil?
  if verbatim_name
    table[:verbatim_name].not_eq(nil)
  else
    table[:verbatim_name].eq(nil)
  end
end

#with_etymology_facet ⇒ Object

Returns Scope.

Returns:

  • Scope



600
601
602
603
604
605
 
# File 'lib/queries/taxon_name/filter.rb', line 600

def with_etymology_facet
  return nil if etymology.nil?
  etymology ?
    ::TaxonName.where.not(etymology: nil) :
    ::TaxonName.where(etymology: nil)
end

#with_nomenclature_code ⇒ Arel::Nodes::Grouping?

Returns:

  • (Arel::Nodes::Grouping, nil) 


799
800
801
802
 
# File 'lib/queries/taxon_name/filter.rb', line 799

def with_nomenclature_code
  return nil if nomenclature_code.nil?
  table[:rank_class].matches(nomenclature_code)
end

#with_nomenclature_group ⇒ Arel::Nodes::Grouping?

Returns:

  • (Arel::Nodes::Grouping, nil) 


785
786
787
788
 
# File 'lib/queries/taxon_name/filter.rb', line 785

def with_nomenclature_group
  return nil if nomenclature_group.blank?
  table[:rank_class].matches(nomenclature_group)
end

#year_facet ⇒ Object 



846
847
848
849
850
851
852
 
# File 'lib/queries/taxon_name/filter.rb', line 846

def year_facet
  return nil if year.blank?

  s = Date.new(@year.to_i)
  e = Date.new(@year.to_i, 12, 31)
  table[:cached_nomenclature_date].between(s..e)
end

#year_range_facet ⇒ Object 



854
855
856
857
858
 
# File 'lib/queries/taxon_name/filter.rb', line 854

def year_range_facet
  return nil if year_end.nil? && year_start.nil?
  s, e = [year_start, year_end].compact
  ::TaxonName.where(cached_nomenclature_date: (s..e))
end