Class: TaxonNameRelationship::Iczn::Invalidating::Homonym::Secondary

Inherits:
TaxonNameRelationship::Iczn::Invalidating::Homonym show all
Defined in:
app/models/taxon_name_relationship/iczn/invalidating/homonym/secondary.rb

Direct Known Subclasses

Secondary1961

Defined Under Namespace

Classes: Secondary1961

Constant Summary collapse

NOMEN_URI = 
'http://purl.obolibrary.org/obo/NOMEN_0000291'.freeze

Constants included from SoftValidation

SoftValidation::ANCESTORS_WITH_SOFT_VALIDATIONS

Instance Attribute Summary

Attributes inherited from TaxonNameRelationship

#no_cached, #object_taxon_name_id, #project_id, #subject_taxon_name_id, #type

Class Method Summary collapse

Instance Method Summary collapse

Methods inherited from TaxonNameRelationship::Iczn::Invalidating::Homonym

disjoint_object_classes, #object_status_connector_to_subject, #subject_properties, #subject_status_connector_to_object, #sv_fix_add_synonym_for_homonym, #sv_missing_nomen_novum, #sv_missing_replacement_name, #sv_validate_priority, #sv_validate_total_suppression

Methods inherited from TaxonNameRelationship::Iczn::Invalidating

assignable, disjoint_object_classes, disjoint_subject_classes, gbif_status_of_subject, nomenclatural_priority, #object_status_connector_to_subject, #similar_homonym_string, #subject_properties, #subject_status_connector_to_object

Methods inherited from TaxonNameRelationship::Iczn

disjoint_object_classes, disjoint_subject_classes, #sv_validate_priority

Methods inherited from TaxonNameRelationship

assignable, collect_descendants_and_itself_to_s, collect_descendants_to_s, collect_to_s, disjoint_object_classes, disjoint_subject_classes, #dwc_occurrences, gbif_status_of_object, gbif_status_of_subject, #is_combination?, #is_invalidating?, nomen_uri, nomenclatural_priority, #nomenclature_date, #object_properties, #object_status_connector_to_subject, #object_status_tag, parent, required_taxon_name_relationships, #set_cached_names_for_taxon_names, #subject_and_object_in_same_project, #subject_invalid_statuses, #subject_properties, #subject_status_connector_to_object, #subject_status_tag, #sv_coordinated_taxa, #sv_coordinated_taxa_object, #sv_fix_combination_relationship, #sv_fix_coordinated_object_taxa, #sv_fix_coordinated_subject_taxa, #sv_fix_objective_synonym_relationship, #sv_fix_subject_parent_update, #sv_objective_synonym_relationship, #sv_synonym_linked_to_valid_name, #sv_validate_disjoint_object, #sv_validate_disjoint_relationships, #sv_validate_disjoint_subject, #sv_validate_priority, #sv_validate_required_relationships, #sv_validate_seniority, #type_class, #type_class=, #type_name, #validate_object_and_subject_both_protonyms, #validate_object_must_equal_subject_for_uncertain_placement, #validate_rank_group, #validate_subject_and_object_are_not_identical, #validate_subject_and_object_ranks, #validate_subject_and_object_share_code, #validate_type, #validate_uniqueness_of_typification_object

Methods included from Shared::IsData

#errors_excepting, #full_error_messages_excepting, #identical, #is_community?, #is_destroyable?, #is_editable?, #is_in_use?, #is_in_users_projects?, #metamorphosize, #similar

Methods included from SoftValidation

#clear_soft_validations, #fix_for, #fix_soft_validations, #soft_fixed?, #soft_valid?, #soft_validate, #soft_validated?, #soft_validations, #soft_validators

Methods included from Shared::Notes

#concatenated_notes_string, #reject_notes

Methods included from Shared::Citations

#cited?, #mark_citations_for_destruction, #nomenclature_date, #origin_citation_source_id, #reject_citations, #requires_citation?, #sources_by_topic_id

Methods included from Housekeeping

#has_polymorphic_relationship?

Methods inherited from ApplicationRecord

transaction_with_retry

Class Method Details

.assignment_method ⇒ Object 



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# File 'app/models/taxon_name_relationship/iczn/invalidating/homonym/secondary.rb', line 33

def self.assignment_method
  # bus.set_as_iczn_secondary_homonym_of(aus)
  :iczn_set_as_secondary_homonym_of
end

.disjoint_taxon_name_relationships ⇒ Object 



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# File 'app/models/taxon_name_relationship/iczn/invalidating/homonym/secondary.rb', line 19

def self.disjoint_taxon_name_relationships
  self.parent.disjoint_taxon_name_relationships +
      self.collect_to_s(TaxonNameRelationship::Iczn::Invalidating::Homonym,
          TaxonNameRelationship::Iczn::Invalidating::Homonym::Primary)
end

.inverse_assignment_method ⇒ Object 



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# File 'app/models/taxon_name_relationship/iczn/invalidating/homonym/secondary.rb', line 38

def self.inverse_assignment_method
  # aus.iczn_secondary_homonym = bus
  :iczn_secondary_homonym
end

.valid_object_ranks ⇒ Object

right_side



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# File 'app/models/taxon_name_relationship/iczn/invalidating/homonym/secondary.rb', line 15

def self.valid_object_ranks
  SPECIES_RANK_NAMES_ICZN
end

.valid_subject_ranks ⇒ Object

left_side



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# File 'app/models/taxon_name_relationship/iczn/invalidating/homonym/secondary.rb', line 10

def self.valid_subject_ranks
  SPECIES_RANK_NAMES_ICZN
end

Instance Method Details

#object_status ⇒ Object 



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# File 'app/models/taxon_name_relationship/iczn/invalidating/homonym/secondary.rb', line 25

def object_status
  'senior secondary homonym'
end

#subject_status ⇒ Object 



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# File 'app/models/taxon_name_relationship/iczn/invalidating/homonym/secondary.rb', line 29

def subject_status
  'secondary homonym'
end

#sv_combinations ⇒ Object 



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# File 'app/models/taxon_name_relationship/iczn/invalidating/homonym/secondary.rb', line 67

def sv_combinations
  s = subject_taxon_name
  o = object_taxon_name
  if (s.all_generic_placements & o.all_generic_placements).empty?
    soft_validations.add(:base, "No combination available showing #{s.cached_html_name_and_author_year} and #{o.cached_html_name_and_author_year} placed in the same genus")
  end
end

#sv_fix_not_specific_relationship ⇒ Object 



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# File 'app/models/taxon_name_relationship/iczn/invalidating/homonym/secondary.rb', line 84

def sv_fix_not_specific_relationship
  new_relationship_name = 'TaxonNameRelationship::Iczn::Invalidating::Homonym::Secondary::Secondary1961'
  if new_relationship_name && self.type_name != new_relationship_name
    self.type = new_relationship_name
    self.save
    return true
  end
  false
end

#sv_not_specific_relationship ⇒ Object 



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# File 'app/models/taxon_name_relationship/iczn/invalidating/homonym/secondary.rb', line 75

def sv_not_specific_relationship
  if self.source && self.source.year < 1961
    soft_validations.add(
      :type, "The relationship should change to the 'Secondary homonym replaced before 1961'",
      success_message: "The relationship updated to 'Secondary homonym replaced before 1961'",
      failure_message:  'Failed to update the homonym relationship')
  end
end

#sv_same_genus ⇒ Object 



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# File 'app/models/taxon_name_relationship/iczn/invalidating/homonym/secondary.rb', line 51

def sv_same_genus
  s = subject_taxon_name
  o = object_taxon_name
  if s.get_valid_taxon_name.ancestor_at_rank('genus') != o.get_valid_taxon_name.ancestor_at_rank('genus')
    soft_validations.add(:type, "Secondary homonyms #{s.cached_html_name_and_author_year} and #{o.cached_html_name_and_author_year} should be placed in the same parent genus, the homonymy should be deleted or changed to 'secondary homonym replaced before 1961'")
  end
end

#sv_same_original_genus ⇒ Object 



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# File 'app/models/taxon_name_relationship/iczn/invalidating/homonym/secondary.rb', line 43

def sv_same_original_genus
  s = subject_taxon_name
  o = object_taxon_name
  if !s.original_genus.nil? && s.original_genus == o.original_genus
    soft_validations.add(:type, "#{s.cached_html_name_and_author_year} and #{o.cached_html_name_and_author_year} species described in the same original genus #{s.original_genus.cached_html}, they are primary homonyms")
  end
end

#sv_specific_relationship ⇒ Object 



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# File 'app/models/taxon_name_relationship/iczn/invalidating/homonym/secondary.rb', line 59

def sv_specific_relationship
  s = subject_taxon_name
  o = object_taxon_name
  if s.cached_secondary_homonym_alternative_spelling != o.cached_secondary_homonym_alternative_spelling
    soft_validations.add(:type, "#{s.cached_html_name_and_author_year} and #{o.cached_html_name_and_author_year} are not similar enough to be homonyms")
  end
end

#sv_synonym_relationship ⇒ Object 



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# File 'app/models/taxon_name_relationship/iczn/invalidating/homonym/secondary.rb', line 94

def sv_synonym_relationship
  unless self.source
    soft_validations.add(:base, 'The original publication is not selected')
  end
end