Class: TaxonNameRelationship::Iczn::Invalidating::Synonym::Subjective

Inherits:
TaxonNameRelationship::Iczn::Invalidating::Synonym show all
Defined in:
app/models/taxon_name_relationship/iczn/invalidating/synonym/subjective.rb

Constant Summary collapse

NOMEN_URI = 
'http://purl.obolibrary.org/obo/NOMEN_0000285'.freeze

Constants included from SoftValidation

SoftValidation::ANCESTORS_WITH_SOFT_VALIDATIONS

Instance Attribute Summary

Attributes inherited from TaxonNameRelationship

#no_cached, #object_taxon_name_id, #project_id, #subject_taxon_name_id, #type

Class Method Summary collapse

Instance Method Summary collapse

Methods inherited from TaxonNameRelationship::Iczn::Invalidating::Synonym

disjoint_object_classes, #object_status_connector_to_subject, #subject_status_connector_to_object, #sv_fix_not_specific_relationship, #sv_synonym_relationship

Methods inherited from TaxonNameRelationship::Iczn::Invalidating

assignable, disjoint_object_classes, disjoint_subject_classes, gbif_status_of_subject, nomenclatural_priority, #object_status_connector_to_subject, #similar_homonym_string, #subject_properties, #subject_status_connector_to_object, #sv_synonym_relationship

Methods inherited from TaxonNameRelationship::Iczn

disjoint_object_classes, disjoint_subject_classes, #sv_validate_priority, valid_object_ranks, valid_subject_ranks

Methods inherited from TaxonNameRelationship

assignable, collect_descendants_and_itself_to_s, collect_descendants_to_s, collect_to_s, disjoint_object_classes, disjoint_subject_classes, #dwc_occurrences, gbif_status_of_object, gbif_status_of_subject, #is_combination?, #is_invalidating?, nomen_uri, nomenclatural_priority, #nomenclature_date, #object_properties, #object_status_connector_to_subject, #object_status_tag, parent, required_taxon_name_relationships, #set_cached_names_for_taxon_names, #subject_and_object_in_same_project, #subject_invalid_statuses, #subject_properties, #subject_status_connector_to_object, #subject_status_tag, #sv_coordinated_taxa, #sv_coordinated_taxa_object, #sv_fix_combination_relationship, #sv_fix_coordinated_object_taxa, #sv_fix_coordinated_subject_taxa, #sv_fix_not_specific_relationship, #sv_fix_objective_synonym_relationship, #sv_fix_subject_parent_update, #sv_objective_synonym_relationship, #sv_synonym_linked_to_valid_name, #sv_synonym_relationship, #sv_validate_disjoint_object, #sv_validate_disjoint_relationships, #sv_validate_disjoint_subject, #sv_validate_priority, #sv_validate_required_relationships, #type_class, #type_class=, #type_name, valid_object_ranks, valid_subject_ranks, #validate_object_and_subject_both_protonyms, #validate_object_must_equal_subject_for_uncertain_placement, #validate_rank_group, #validate_subject_and_object_are_not_identical, #validate_subject_and_object_ranks, #validate_subject_and_object_share_code, #validate_type, #validate_uniqueness_of_typification_object

Methods included from Shared::IsData

#errors_excepting, #full_error_messages_excepting, #identical, #is_community?, #is_destroyable?, #is_editable?, #is_in_use?, #is_in_users_projects?, #metamorphosize, #similar

Methods included from SoftValidation

#clear_soft_validations, #fix_for, #fix_soft_validations, #soft_fixed?, #soft_valid?, #soft_validate, #soft_validated?, #soft_validations, #soft_validators

Methods included from Shared::Notes

#concatenated_notes_string, #reject_notes

Methods included from Shared::Citations

#cited?, #mark_citations_for_destruction, #nomenclature_date, #origin_citation_source_id, #reject_citations, #requires_citation?, #sources_by_topic_id

Methods included from Housekeeping

#has_polymorphic_relationship?

Methods inherited from ApplicationRecord

transaction_with_retry

Class Method Details

.assignment_method ⇒ Object 



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# File 'app/models/taxon_name_relationship/iczn/invalidating/synonym/subjective.rb', line 18

def self.assignment_method
  # bus.set_as_iczn_subjective_synonym_of(aus)
  :iczn_set_as_subjective_synonym_of
end

.disjoint_taxon_name_relationships ⇒ Object 



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# File 'app/models/taxon_name_relationship/iczn/invalidating/synonym/subjective.rb', line 5

def self.disjoint_taxon_name_relationships
  self.parent.disjoint_taxon_name_relationships +
      self.collect_to_s(TaxonNameRelationship::Iczn::Invalidating::Synonym)
end

.inverse_assignment_method ⇒ Object

as.



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# File 'app/models/taxon_name_relationship/iczn/invalidating/synonym/subjective.rb', line 24

def self.inverse_assignment_method
  # aus.iczn_subjective_synonym = bus
  :iczn_subjective_synonym
end

Instance Method Details

#object_status ⇒ Object 



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# File 'app/models/taxon_name_relationship/iczn/invalidating/synonym/subjective.rb', line 10

def object_status
  'senior subjective synonym'
end

#subject_status ⇒ Object 



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# File 'app/models/taxon_name_relationship/iczn/invalidating/synonym/subjective.rb', line 14

def subject_status
  'subjective synonym'
end

#sv_not_specific_relationship ⇒ Object 



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# File 'app/models/taxon_name_relationship/iczn/invalidating/synonym/subjective.rb', line 47

def sv_not_specific_relationship
  true
end

#sv_specific_relationship ⇒ Object 



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# File 'app/models/taxon_name_relationship/iczn/invalidating/synonym/subjective.rb', line 29

def sv_specific_relationship
  s = subject_taxon_name
  o = object_taxon_name
  if (s.type_taxon_name == o.type_taxon_name && !s.type_taxon_name.nil? ) || (!s.get_primary_type.empty? && s.has_same_primary_type(o) )
    soft_validations.add(:type, "Subjective synonyms #{s.cached_html} and #{o.cached_html} should not have the same type")
  end
end

#sv_validate_seniority ⇒ Object 



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# File 'app/models/taxon_name_relationship/iczn/invalidating/synonym/subjective.rb', line 37

def sv_validate_seniority
  if self.subject_taxon_name.cached_nomenclature_date == self.object_taxon_name.cached_nomenclature_date && subject_invalid_statuses.empty?
    r1 = self.subject_taxon_name.original_combination_relationships.reload.sort{|a,b| ORIGINAL_COMBINATION_RANKS.index(a.type) <=> ORIGINAL_COMBINATION_RANKS.index(b.type) }
    r2 = self.object_taxon_name.original_combination_relationships.reload.sort{|a,b| ORIGINAL_COMBINATION_RANKS.index(a.type) <=> ORIGINAL_COMBINATION_RANKS.index(b.type) }
    if !r1.empty? && !r2.empty? && ORIGINAL_COMBINATION_RANKS.index(r1.last.type) < ORIGINAL_COMBINATION_RANKS.index(r2.last.type) && TaxonNameRelationship.where_subject_is_taxon_name(self.subject_taxon_name).with_two_type_bases('TaxonNameRelationship::Iczn::Invalidating::Homonym', 'TaxonNameRelationship::Iczn::Validating').not_self(self).empty?
      soft_validations.add(:base, "#{self.subject_taxon_name.cached_original_combination_html} has priority; it was described simultaneously, but at higher rank than #{self.object_taxon_name.cached_original_combination_html}")
    end
  end
end