Class: TaxonNamesController
- Inherits:
-
ApplicationController
- Object
- ActionController::Base
- ApplicationController
- TaxonNamesController
- Defined in:
- app/controllers/taxon_names_controller.rb
Instance Method Summary collapse
-
#api_index ⇒ Object
GET /api/v1/taxon_names.
- #api_params ⇒ Object private
-
#api_show ⇒ Object
GET /api/v1/taxon_names/:id.
- #autocomplete ⇒ Object
- #autocomplete_params ⇒ Object private
- #batch_load ⇒ Object
- #batch_params ⇒ Object private
-
#create ⇒ Object
POST /taxon_names POST /taxon_names.json.
- #create_castor_batch_load ⇒ Object
- #create_simple_batch_load ⇒ Object
-
#destroy ⇒ Object
DELETE /taxon_names/1 DELETE /taxon_names/1.json.
-
#download ⇒ Object
GET /taxon_names/download.
-
#edit ⇒ Object
GET /taxon_names/1/edit.
- #filter_params ⇒ Object private
-
#index ⇒ Object
GET /taxon_names GET /taxon_names.json.
- #list ⇒ Object
-
#new ⇒ Object
GET /taxon_names/new.
-
#original_combination ⇒ Object
GET /taxon_names/1/original_combination.
- #parse ⇒ Object
- #predicted_rank ⇒ Object
- #preview_castor_batch_load ⇒ Object
- #preview_simple_batch_load ⇒ Object
- #random ⇒ Object
- #rank_table ⇒ Object
- #ranks ⇒ Object
- #search ⇒ Object
-
#select_options ⇒ Object
GET /taxon_names/select_options.
- #set_taxon_name ⇒ Object private
-
#show ⇒ Object
GET /taxon_names/1 GET /taxon_names/1.json.
- #taxon_name_params ⇒ Object private
-
#update ⇒ Object
PATCH/PUT /taxon_names/1 PATCH/PUT /taxon_names/1.json.
Methods included from DataControllerConfiguration::ProjectDataControllerConfiguration
Methods included from RequestType
Methods included from LogRecent
Methods included from Cookies
#digest_cookie, #digested_cookie_exists?
Methods included from Whitelist
Methods included from ProjectsHelper
#invalid_object, #project_link, #project_matches, #project_tag, #projects_list, #projects_search_form
Methods included from Api::Intercept
Methods included from TokenAuthentication
#intercept_project, #intercept_user, #intercept_user_or_project, #project_token_authenticate, #token_authenticate
Instance Method Details
#api_index ⇒ Object
GET /api/v1/taxon_names
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# File 'app/controllers/taxon_names_controller.rb', line 220 def api_index @taxon_names = Queries::TaxonName::Filter.new(api_params).all .where(project_id: sessions_current_project_id) .order('taxon_names.id') .page(params[:page]).per(params[:per]) render '/taxon_names/api/v1/index' end |
#api_params ⇒ Object (private)
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# File 'app/controllers/taxon_names_controller.rb', line 312 def api_params params.permit( :name, :author, :year, :leaves, :exact, :validity, :descendants, :descendants_max_depth, :updated_since, :type_metadata, :citations, :otus, :authors, :nomenclature_group, # !! different than autocomplete :nomenclature_code, :taxon_name_type, :etymology, type: [], taxon_name_id: [], parent_id: [], taxon_name_classification: [], taxon_name_relationship_type: [], taxon_name_relationship: [] ).to_h.symbolize_keys.merge(project_id: sessions_current_project_id) # TODO: see config in collection objects controller # a[:user_id] = params[:user_id] if params[:user_id] && is_project_member_by_id(params[:user_id], sessions_current_project_id) # double check vs. setting project_id from API # a end |
#api_show ⇒ Object
GET /api/v1/taxon_names/:id
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# File 'app/controllers/taxon_names_controller.rb', line 229 def api_show render '/taxon_names/api/v1/show' end |
#autocomplete ⇒ Object
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# File 'app/controllers/taxon_names_controller.rb', line 90 def autocomplete render json: {} and return if params[:term].blank? @taxon_names = Queries::TaxonName::Autocomplete.new( params[:term], **autocomplete_params ).autocomplete end |
#autocomplete_params ⇒ Object (private)
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# File 'app/controllers/taxon_names_controller.rb', line 240 def autocomplete_params params.permit( :valid, :exact, :no_leaves, type: [], parent_id: [], nomenclature_group: [] ).to_h.symbolize_keys.merge(project_id: sessions_current_project_id) end |
#batch_load ⇒ Object
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# File 'app/controllers/taxon_names_controller.rb', line 110 def batch_load end |
#batch_params ⇒ Object (private)
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# File 'app/controllers/taxon_names_controller.rb', line 266 def batch_params params.permit( :file, :parent_taxon_name_id, :nomenclature_code, :also_create_otu, :import_level).merge( user_id: sessions_current_user_id, project_id: sessions_current_project_id ).to_h.symbolize_keys end |
#create ⇒ Object
POST /taxon_names POST /taxon_names.json
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# File 'app/controllers/taxon_names_controller.rb', line 38 def create @taxon_name = TaxonName.new(taxon_name_params) respond_to do |format| if @taxon_name.save format.html { redirect_to url_for(@taxon_name.), notice: "Taxon name '#{@taxon_name.name}' was successfully created." } format.json { render :show, status: :created, location: @taxon_name. } else format.html { render action: :new } format.json { render json: @taxon_name.errors, status: :unprocessable_entity } end end end |
#create_castor_batch_load ⇒ Object
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# File 'app/controllers/taxon_names_controller.rb', line 191 def create_castor_batch_load if params[:file] && (params[:file].tempfile, :Castor_taxon_names_md5) @result = BatchLoad::Import::TaxonNames::CastorInterpreter.new(**batch_params) if @result.create flash[:notice] = "Successfully proccessed file, #{@result.total_records_created} items were created." render 'taxon_names/batch_load/castor/create' and return else flash[:alert] = 'Batch import failed.' end else flash[:alert] = 'File to batch upload must be supplied.' end render :batch_load end |
#create_simple_batch_load ⇒ Object
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# File 'app/controllers/taxon_names_controller.rb', line 165 def create_simple_batch_load if params[:file] && (params[:file].tempfile, :simple_taxon_names_md5) @result = BatchLoad::Import::TaxonifiToTaxonworks.new(**batch_params) if @result.create flash[:notice] = "Successfully proccessed file, #{@result.total_records_created} taxon names were created." render 'taxon_names/batch_load/simple/create' and return else flash[:alert] = 'Batch import failed.' end else flash[:alert] = 'File to batch upload must be supplied.' end render :batch_load end |
#destroy ⇒ Object
DELETE /taxon_names/1 DELETE /taxon_names/1.json
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# File 'app/controllers/taxon_names_controller.rb', line 69 def destroy @taxon_name.destroy respond_to do |format| if @taxon_name.destroyed? format.html {redirect_back(fallback_location: (request.referer || root_path), notice: 'TaxonName was successfully destroyed.')} format.json {head :no_content} else format.html {redirect_back(fallback_location: (request.referer || root_path), notice: 'TaxonName was not destroyed, ' + @taxon_name.errors..join('; '))} format.json {render json: @taxon_name.errors, status: :unprocessable_entity} end end end |
#download ⇒ Object
GET /taxon_names/download
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# File 'app/controllers/taxon_names_controller.rb', line 104 def download send_data Export::Download.generate_csv( TaxonName.where(project_id: sessions_current_project_id) ), type: 'text', filename: "taxon_names_#{DateTime.now}.csv" end |
#edit ⇒ Object
GET /taxon_names/1/edit
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# File 'app/controllers/taxon_names_controller.rb', line 32 def edit @taxon_name.source = Source.new if !@taxon_name.source end |
#filter_params ⇒ Object (private)
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# File 'app/controllers/taxon_names_controller.rb', line 278 def filter_params params.permit( :name, :author, :year, :leaves, :exact, :validity, :ancestors, :descendants, :descendants_max_depth, :updated_since, :type_metadata, :citations, :otus, :authors, :nomenclature_group, # !! different than autocomplete :nomenclature_code, :taxon_name_type, :etymology, :user_id, :user_target, :user_date_start, :user_date_end, :per, :page, type: [], taxon_name_id: [], parent_id: [], taxon_name_classification: [], taxon_name_relationship_type: [], taxon_name_relationship: [] # user_id: [] ).to_h.symbolize_keys.merge(project_id: sessions_current_project_id) end |
#index ⇒ Object
GET /taxon_names GET /taxon_names.json
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# File 'app/controllers/taxon_names_controller.rb', line 9 def index respond_to do |format| format.html do @recent_objects = TaxonName.recent_from_project_id(sessions_current_project_id).order(updated_at: :desc).limit(10) render '/shared/data/all/index' end format.json { @taxon_names = Queries::TaxonName::Filter.new(filter_params).all.page(params[:page]).per(params[:per] || 500) } end end |
#list ⇒ Object
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# File 'app/controllers/taxon_names_controller.rb', line 99 def list @taxon_names = TaxonName.with_project_id(sessions_current_project_id).order(:id).page(params[:page]) end |
#new ⇒ Object
GET /taxon_names/new
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# File 'app/controllers/taxon_names_controller.rb', line 27 def new @taxon_name = Protonym.new(source: Source.new) end |
#original_combination ⇒ Object
GET /taxon_names/1/original_combination
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# File 'app/controllers/taxon_names_controller.rb', line 216 def original_combination end |
#parse ⇒ Object
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# File 'app/controllers/taxon_names_controller.rb', line 206 def parse @combination = Combination.where(project_id: sessions_current_project_id).find(params[:combination_id]) if params[:combination_id] # TODO: this may have to change to taxon_name_id @result = TaxonWorks::Vendor::Biodiversity::Result.new( query_string: params.require(:query_string), project_id: sessions_current_project_id, code: :iczn # !! TODO: ).result end |
#predicted_rank ⇒ Object
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# File 'app/controllers/taxon_names_controller.rb', line 117 def predicted_rank if params[:parent_id] p = TaxonName.find_by(id: params[:parent_id]) if p.nil? render json: {predicted_rank: ''}.to_json else render json: {predicted_rank: p.predicted_child_rank(params[:name]).to_s}.to_json end else render json: {predicted_rank: ''}.to_json end end |
#preview_castor_batch_load ⇒ Object
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# File 'app/controllers/taxon_names_controller.rb', line 180 def preview_castor_batch_load if params[:file] @result = BatchLoad::Import::TaxonNames::CastorInterpreter.new(**batch_params) (params[:file].tempfile, :Castor_taxon_names_md5) render 'taxon_names/batch_load/castor/preview' else flash[:notice] = 'No file provided!' redirect_to action: :batch_load end end |
#preview_simple_batch_load ⇒ Object
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# File 'app/controllers/taxon_names_controller.rb', line 154 def preview_simple_batch_load if params[:file] @result = BatchLoad::Import::TaxonifiToTaxonworks.new(**batch_params) (params[:file].tempfile, :simple_taxon_names_md5) render 'taxon_names/batch_load/simple/preview' else flash[:notice] = 'No file provided!' redirect_to action: :batch_load end end |
#random ⇒ Object
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# File 'app/controllers/taxon_names_controller.rb', line 130 def random redirect_to browse_nomenclature_task_path( taxon_name_id: TaxonName.where(project_id: sessions_current_project_id).order('random()').limit(1).pluck(:id).first ) end |
#rank_table ⇒ Object
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# File 'app/controllers/taxon_names_controller.rb', line 136 def rank_table @q = Queries::TaxonName::Tabular.new( ancestor_id: params.require(:ancestor_id), ranks: params.require(:ranks), fieldsets: params[:fieldsets], limit: params[:limit], validity: params[:validity], combinations: params[:combinations], project_id: sessions_current_project_id, rank_data: params[:rank_data] ) end |
#ranks ⇒ Object
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# File 'app/controllers/taxon_names_controller.rb', line 113 def ranks render json: RANKS_JSON.to_json end |
#search ⇒ Object
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# File 'app/controllers/taxon_names_controller.rb', line 82 def search if params[:id].blank? redirect_to taxon_names_path, notice: 'You must select an item from the list with a click or tab press before clicking show.' else redirect_to taxon_name_path(params[:id]) end end |
#select_options ⇒ Object
GET /taxon_names/select_options
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# File 'app/controllers/taxon_names_controller.rb', line 150 def @taxon_names = TaxonName.select_optimized(sessions_current_user_id, sessions_current_project_id) end |
#set_taxon_name ⇒ Object (private)
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# File 'app/controllers/taxon_names_controller.rb', line 235 def set_taxon_name @taxon_name = TaxonName.with_project_id(sessions_current_project_id).includes(:creator, :updater).find(params[:id]) @recent_object = @taxon_name end |
#show ⇒ Object
GET /taxon_names/1 GET /taxon_names/1.json
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# File 'app/controllers/taxon_names_controller.rb', line 23 def show end |
#taxon_name_params ⇒ Object (private)
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# File 'app/controllers/taxon_names_controller.rb', line 247 def taxon_name_params params.require(:taxon_name).permit( :name, :parent_id, :year_of_publication, :etymology, :verbatim_author, :verbatim_name, :rank_class, :type, :masculine_name, :feminine_name, :neuter_name, :also_create_otu, roles_attributes: [ :id, :_destroy, :type, :person_id, :position, person_attributes: [ :last_name, :first_name, :suffix, :prefix ] ], origin_citation_attributes: [:id, :_destroy, :source_id, :pages], taxon_name_classifications_attributes: [:id, :_destroy, :type] ) end |
#update ⇒ Object
PATCH/PUT /taxon_names/1 PATCH/PUT /taxon_names/1.json
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# File 'app/controllers/taxon_names_controller.rb', line 54 def update respond_to do |format| if @taxon_name.update(taxon_name_params) @taxon_name.reload format.html { redirect_to url_for(@taxon_name.), notice: 'Taxon name was successfully updated.' } format.json { render :show, status: :ok, location: @taxon_name. } else format.html { render action: :edit } format.json { render json: @taxon_name.errors, status: :unprocessable_entity } end end end |