Module: TaxonNamesHelper

Defined in:
app/helpers/taxon_names_helper.rb

Instance Method Summary collapse

Instance Method Details



312
313
314
315
316
317
318
319
320
321
 
# File 'app/helpers/taxon_names_helper.rb', line 312

def ancestor_browse_taxon_name_link(taxon_name, path = :browse_nomenclature_task_path)
  text = 'Up'
  if taxon_name.ancestors.any?
    a = taxon_name.ancestors.first.metamorphosize
    text = object_tag(a)
    link_to(content_tag(:span, text, data: {icon: 'arrow-up'}, class: 'small-icon'), taxon_name_link_path(a, path), class: 'navigation-item', data: {arrow: 'ancestor'})
  else
    content_tag(:div, content_tag(:span, text, class: 'small-icon', data: {icon: 'arrow-up'}), class: 'navigation-item disable')
  end
end

#cached_classified_as_tag(taxon_name) ⇒ Object 



207
208
209
 
# File 'app/helpers/taxon_names_helper.rb', line 207

def cached_classified_as_tag(taxon_name)
  taxon_name.cached_classified_as ? taxon_name.cached_classified_as.strip.html_safe : ''
end

#current_author_year(taxon_name) ⇒ String

Returns:

  • (String) 


107
108
109
110
 
# File 'app/helpers/taxon_names_helper.rb', line 107

def current_author_year(taxon_name)
  return nil if taxon_name.nil? || taxon_name.cached_author_year.nil?
  taxon_name.cached_author_year
end

#defined_full_original_taxon_name_tag(taxon_name) ⇒ String?

!! This is used in taxon_name attributes now! TODO: Refactor our logic for display contexts and value contexts to better reflect presence of data vs. utility of report.

Returns:

  • (String, nil) —

    if no cached_original_combination is defined return nothing



85
86
87
88
 
# File 'app/helpers/taxon_names_helper.rb', line 85

def defined_full_original_taxon_name_tag(taxon_name)
  return nil if taxon_name.nil?  || taxon_name.cached_original_combination_html.blank?
  full_original_taxon_name_tag(taxon_name)
end

#descendant_browse_taxon_name_link(taxon_name, path = :browse_nomenclature_task_path) ⇒ Object 



323
324
325
326
327
328
329
330
331
332
 
# File 'app/helpers/taxon_names_helper.rb', line 323

def descendant_browse_taxon_name_link(taxon_name, path = :browse_nomenclature_task_path)
  text = 'Down'
  if taxon_name.descendants.any?
    a = taxon_name.descendants.first.metamorphosize
    text = taxon_name_tag(a)
    link_to(content_tag(:span, text, data: {icon: 'arrow-down'}, class: 'small-icon'), taxon_name_link_path(a, path), class: 'navigation-item', data: {arrow: 'descendant'})
  else
    content_tag(:div, content_tag(:span, text, class: 'small-icon', data: {icon: 'arrow-down'}), class: 'navigation-item disable')
  end
end

#document_names_per_year(names) ⇒ Object 



521
522
523
524
525
 
# File 'app/helpers/taxon_names_helper.rb', line 521

def document_names_per_year(names)
  taxon_names_per_year(
    taxon_names_by_year_count(names)
  )
end

#edit_original_combination_task_link(taxon_name) ⇒ Object 



261
262
263
 
# File 'app/helpers/taxon_names_helper.rb', line 261

def edit_original_combination_task_link(taxon_name)
  link_to('Edit original combination', edit_protonym_original_combination_task_path(taxon_name)) if GENUS_AND_SPECIES_RANK_NAMES.include?(taxon_name.rank_string)
end

#edit_taxon_name_link(taxon_name, target: nil) ⇒ Object 



276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
 
# File 'app/helpers/taxon_names_helper.rb', line 276

def edit_taxon_name_link(taxon_name, target: nil)
  i = {'Combination': :combination, 'Protonym': :taxon_name}[taxon_name.type.to_sym]
  t = taxon_name.metamorphosize
  case target
  when :edit_task
    path = case i
           when :taxon_name
             new_taxon_name_task_path(taxon_name_id: t.id)
           when :combination
             new_combination_task_path(taxon_name_id: t.id, literal: URI.encode_www_form_component(t.cached)) # only spaces should be an issue
           end
    link_to(
      content_tag(
        :span, 'Edit (task)',
        'data-icon' => 'edit',
        class: 'small-icon'
      ),
      path, class: 'navigation-item', 'data-task' => 'new_taxon_name')
  else
    link_to(content_tag(:span, 'Edit', 'data-icon' => 'edit', 'class' => 'small-icon'), send("edit_#{i}_path}", taxon_name.metamorphosize), 'class' => 'navigation-item')
  end
end

#edit_taxon_name_path_string(taxon_name) ⇒ Object

See #edit_object_path_string in navigation_helper.rb



266
267
268
269
270
271
272
273
274
 
# File 'app/helpers/taxon_names_helper.rb', line 266

def edit_taxon_name_path_string(taxon_name)
  if taxon_name.type == 'Protonym'
    'edit_taxon_name_path'
  elsif taxon_name.type == 'Combination'
    'edit_combination_path'
  else
    nil
  end
end

#full_original_taxon_name_label(taxon_name) ⇒ String

Returns the name in original combination, with author year, without HTML.

Returns:

  • (String) —

    the name in original combination, with author year, without HTML



92
93
94
95
96
97
 
# File 'app/helpers/taxon_names_helper.rb', line 92

def full_original_taxon_name_label(taxon_name)
  return nil if taxon_name.nil? || taxon_name.cached_original_combination.nil?
  [ taxon_name.cached_original_combination,
    taxon_name.original_author_year
  ].compact.join(' ')
end

#full_original_taxon_name_tag(taxon_name) ⇒ String

Returns the name in original combination, with author year, with HTML.

Returns:

  • (String) —

    the name in original combination, with author year, with HTML



73
74
75
76
77
78
 
# File 'app/helpers/taxon_names_helper.rb', line 73

def full_original_taxon_name_tag(taxon_name)
  return nil if taxon_name.nil?
  [ original_taxon_name_tag(taxon_name),
    history_author_year_tag(taxon_name)
  ].compact.join(' ').html_safe
end

#full_taxon_name_tag(taxon_name) ⇒ String

Returns the current name/combination with author year, with HTML.

Returns:

  • (String) —

    the current name/combination with author year, with HTML



66
67
68
69
 
# File 'app/helpers/taxon_names_helper.rb', line 66

def full_taxon_name_tag(taxon_name)
  return nil if taxon_name.nil?
  [taxon_name_tag(taxon_name), taxon_name.cached_author_year].compact.join(' ').html_safe
end

#label_for_taxon_name(taxon_name) ⇒ String

!! Unified deprecated taxon_name_name_string() here

Returns:

  • (String) —

    the current name/combination with author year, without HTML



14
15
16
17
 
# File 'app/helpers/taxon_names_helper.rb', line 14

def label_for_taxon_name(taxon_name)
  return nil if taxon_name.nil?
  [taxon_name.cached, taxon_name.cached_author_year].compact.join(' ')
end

#next_sibling_browse_taxon_name_link(taxon_name, path = :browse_nomenclature_task_path) ⇒ Object 



334
335
336
337
338
339
340
341
342
 
# File 'app/helpers/taxon_names_helper.rb', line 334

def next_sibling_browse_taxon_name_link(taxon_name, path = :browse_nomenclature_task_path)
  text = 'Next'
  link_object = taxon_name.next_sibling
  if link_object.nil?
    content_tag(:div, content_tag(:span, text), class:  'navigation-item disable')
  else
    link_to(text, taxon_name_link_path(link_object, path), title: taxon_name_tag(link_object), class: 'navigation-item', data: { button: 'next' })
  end
end

#original_author_year(taxon_name) ⇒ String

Returns removes parens.

Returns:

  • (String) —

    removes parens



101
102
103
104
 
# File 'app/helpers/taxon_names_helper.rb', line 101

def original_author_year(taxon_name)
  return nil if taxon_name.nil? || taxon_name.cached_author_year.nil?
  taxon_name.original_author_year || ''
end

#original_taxon_name_link(taxon_name) ⇒ Object 



238
239
240
241
 
# File 'app/helpers/taxon_names_helper.rb', line 238

def original_taxon_name_link(taxon_name)
  return nil if taxon_name.nil?
  [ link_to(original_taxon_name_tag(taxon_name).html_safe, browse_nomenclature_task_path(taxon_name_id: taxon_name.id)).html_safe, taxon_name.original_author_year].compact.join(' ').html_safe
end

#original_taxon_name_tag(taxon_name) ⇒ String

Returns the taxon name in original combination, without author year, with HTML.

Returns:

  • (String) —

    the taxon name in original combination, without author year, with HTML



55
56
57
58
59
60
61
62
 
# File 'app/helpers/taxon_names_helper.rb', line 55

def original_taxon_name_tag(taxon_name)
  return nil if taxon_name.nil?
  if taxon_name.cached_original_combination_html.nil?
    taxon_name_tag(taxon_name)
  else
    taxon_name.cached_original_combination_html.html_safe
  end
end

#parent_taxon_name_for_select(taxon_name) ⇒ Object

@taxon_name.parent.andand.display_name(:type => :for_select_list)



248
249
250
 
# File 'app/helpers/taxon_names_helper.rb', line 248

def parent_taxon_name_for_select(taxon_name)
  taxon_name.parent ? taxon_name_for_select(taxon_name.parent) : nil
end

#previous_sibling_browse_taxon_name_link(taxon_name, path = :browse_nomenclature_task_path) ⇒ Object 



344
345
346
347
348
349
350
351
352
353
 
# File 'app/helpers/taxon_names_helper.rb', line 344

def previous_sibling_browse_taxon_name_link(taxon_name, path = :browse_nomenclature_task_path)
  text = 'Previous'
  link_object = taxon_name.previous_sibling

  if link_object.nil?
    content_tag(:div, content_tag(:span, text), class: 'navigation-item disable')
  else
    link_to(text, taxon_name_link_path(link_object, path), class: 'navigation-item', data: { button: 'back' })
  end
end

#rank_tag(taxon_name) ⇒ Object 



299
300
301
302
303
304
305
306
307
308
309
310
 
# File 'app/helpers/taxon_names_helper.rb', line 299

def rank_tag(taxon_name)
  case taxon_name.type
  when 'Protonym'
    if taxon_name.rank_class
      taxon_name.rank.downcase
    else
      content_tag(:em, 'ERROR')
    end
  when 'Combination'
    content_tag(:em, 'Combination')
  end
end

#simple_hierarchy_tag(names, selected_names = nil) ⇒ String

!! Does not try to sort names, works best in combination with ‘ancestrify: true` in ::Queries::TaxonNames::Filter TODO: there is some missalignment on the name matching, you’ll see some names that likely matched not linked.

Returns:

  • (String) —

    with HTML



532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
 
# File 'app/helpers/taxon_names_helper.rb', line 532

def simple_hierarchy_tag(names, selected_names = nil)
  match = []

  if selected_names
    match = selected_names.select("CASE WHEN taxon_names.type = 'Protonym' THEN taxon_names.id ELSE taxon_names.cached_valid_taxon_name_id END as id").pluck(:id)
  end

  # taxon_names.cached as alias, \

  objects = names.left_joins(:valid_taxon_name)
    .select("CASE WHEN taxon_names.type = 'Protonym' THEN taxon_names.id ELSE taxon_names.cached_valid_taxon_name_id END as id, \
             CASE WHEN taxon_names.type = 'Protonym' THEN taxon_names.parent_id ELSE valid_taxon_names_taxon_names.parent_id END as parent_id, \
             COALESCE(taxon_names.name, valid_taxon_names_taxon_names.name, valid_taxon_names_taxon_names.name, valid_taxon_Names_taxon_names.cached) as label")
    .order('parent_id, label')
    .distinct

  d = Utilities::Hierarchy.new(objects:, match:).to_a

  rows = []

  d.each do |r|
    s = ' ' * r[3] * 10 # space
    a = (r[2]  ? " [#{r[2]}]" : '') # alias
    if r[4] # matched
      rows.push s + link_to( tag.b(r[1] + a), browse_nomenclature_task_path(taxon_name_id: r[0]))
    else # unmatched
      rows.push s + r[1] + a
    end
  end

  rows.join('<br>').html_safe
end

#taxon_name_autocomplete_selected_tag(taxon_name) ⇒ String

Returns no HTML inside <input>.

Returns:

  • (String) —

    no HTML inside <input>



34
35
36
 
# File 'app/helpers/taxon_names_helper.rb', line 34

def taxon_name_autocomplete_selected_tag(taxon_name)
  label_for_taxon_name(taxon_name)
end

#taxon_name_autocomplete_tag(taxon_name, term) ⇒ Object 



19
20
21
22
23
24
25
26
27
28
29
30
 
# File 'app/helpers/taxon_names_helper.rb', line 19

def taxon_name_autocomplete_tag(taxon_name, term)
  return nil if taxon_name.nil?
  klass = taxon_name.rank_class ? taxon_name.rank_class.nomenclatural_code : nil
  a = [
    content_tag(:span, mark_tag(taxon_name.cached_html_name_and_author_year, term),  class: :klass),
    taxon_name_rank_tag(taxon_name),
    taxon_name_parent_tag(taxon_name),
    taxon_name_original_combination_tag(taxon_name),
    taxon_name_type_short_tag(taxon_name)
    # " [#{taxon_name.sml_t}]"
  ].compact.join('&nbsp;').html_safe
end

#taxon_name_browse_link(taxon_name) ⇒ Object 



221
222
223
224
 
# File 'app/helpers/taxon_names_helper.rb', line 221

def taxon_name_browse_link(taxon_name)
  return nil if taxon_name.nil?
  [ link_to(taxon_name_tag(taxon_name), browse_nomenclature_task_path(taxon_name_id: taxon_name.id)).html_safe, taxon_name.cached_author_year].compact.join(' ').html_safe
end

#taxon_name_for_select(taxon_name) ⇒ Object 



243
244
245
 
# File 'app/helpers/taxon_names_helper.rb', line 243

def taxon_name_for_select(taxon_name)
  taxon_name.name if taxon_name
end

#taxon_name_gender_sentence_tag(taxon_name) ⇒ Object 



202
203
204
205
 
# File 'app/helpers/taxon_names_helper.rb', line 202

def taxon_name_gender_sentence_tag(taxon_name)
  return nil if taxon_name.nil?
  "The name is #{taxon_name.gender_name}." if taxon_name.gender_name
end

#taxon_name_inferred_combination_tag(taxon_name) ⇒ Object 



193
194
195
196
197
198
199
200
 
# File 'app/helpers/taxon_names_helper.rb', line 193

def taxon_name_inferred_combination_tag(taxon_name)
  return nil if taxon_name.nil? || taxon_name.is_combination? || taxon_name.is_valid?
  if taxon_name.is_protonym?
    return nil if taxon_name.cached_primary_homonym == taxon_name.cached_secondary_homonym
  end

  tag.span(tag.em('inferred combination'), class: :subtle)
end

#taxon_name_inventory_stats(taxon_name) ⇒ Object 



368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
 
# File 'app/helpers/taxon_names_helper.rb', line 368

def taxon_name_inventory_stats(taxon_name)

  d = []

  i = {
    rank: nil,
    taxa: {},
    names: {}
  }

  # !! descendants: false is [self and desecendants]
  ::Queries::TaxonName::Filter.new(synonymify: true, descendants: false, taxon_name_id: taxon_name.id).all
    .where(type: 'Protonym')
    .select(:rank_klass).distinct.pluck(:rank_class).compact.sort{|a,b| RANKS.index(a) <=> RANKS.index(b)}.each do |r|

      n = r.safe_constantize.rank_name.to_sym
      j = i.deep_dup

      j[:rank] = n

      j[:names][:valid] = ::Queries::TaxonName::Filter.new(validity: true, descendants: false, taxon_name_id: taxon_name.id, rank: r, taxon_name_type: 'Protonym' ).all.count
      j[:names][:invalid] = ::Queries::TaxonName::Filter.new(descendants: false, synonymify: true, taxon_name_id: taxon_name.id, rank: r, taxon_name_type: 'Protonym' ).all.that_is_invalid.count

      # This is the number of OTUs behind the ranks at this concept, i.e. a measure of how partitioned the data are beyond valid/invalid categories.
      j[:taxa] = ::Queries::Otu::Filter.new(coordinatify: true, taxon_name_query: {descendants: false, taxon_name_id: taxon_name.id, rank: r} ).all.count

      d.push j
    end

  d
end

#taxon_name_latinization_tag(taxon_name) ⇒ Object 



211
212
213
214
 
# File 'app/helpers/taxon_names_helper.rb', line 211

def taxon_name_latinization_tag(taxon_name)
  list = taxon_name.taxon_name_classifications.with_type_array(LATINIZED_TAXON_NAME_CLASSIFICATION_NAMES).map(&:classification_label)
  content_tag(:span,  "The word \"#{taxon_name.name}\" has the following Latin-based classifications: #{list.to_sentence}.", class: 'history__latinized_classifications') if list.any?
end

#taxon_name_link(taxon_name) ⇒ Object 



216
217
218
219
 
# File 'app/helpers/taxon_names_helper.rb', line 216

def taxon_name_link(taxon_name)
  return nil if taxon_name.nil?
  link_to(taxon_name_tag(taxon_name), taxon_name.metamorphosize).html_safe
end

#taxon_name_link_path(taxon_name, path) ⇒ Object (protected) 



567
568
569
570
571
572
573
 
# File 'app/helpers/taxon_names_helper.rb', line 567

def taxon_name_link_path(taxon_name, path)
  if path == :taxon_name_path
    send(path, taxon_name)
  else
    send(path, taxon_name_id: taxon_name.id)
  end
end

#taxon_name_original_combination_tag(taxon_name, css_class = [:feedback, 'feedback-notice', 'feedback-thin']) ⇒ Object 



48
49
50
51
 
# File 'app/helpers/taxon_names_helper.rb', line 48

def taxon_name_original_combination_tag(taxon_name, css_class = [:feedback, 'feedback-notice', 'feedback-thin'] )
  return nil if taxon_name.nil? || taxon_name.cached_original_combination.blank?
  content_tag(:span, taxon_name.cached_original_combination, class: css_class)
end

#taxon_name_otus_links(taxon_name) ⇒ Object 



355
356
357
358
359
360
361
362
363
364
365
366
 
# File 'app/helpers/taxon_names_helper.rb', line 355

def taxon_name_otus_links(taxon_name)
  if taxon_name.otus.load.any?
    ('The following Otus are linked to this name: ' +
     content_tag(:ul, class: 'no_bullets') do
       taxon_name.otus.each do |o|
         concat(content_tag(:li, otu_link(o) ))
       end
     end.html_safe).html_safe
  else
    content_tag(:em, 'There are no Otus linked to this name.')
  end
end

#taxon_name_parent_navigator_item_link(taxon_name, target = :taxon_name_path) ⇒ Object 



226
227
228
229
230
231
232
233
234
235
236
 
# File 'app/helpers/taxon_names_helper.rb', line 226

def taxon_name_parent_navigator_item_link(taxon_name, target = :taxon_name_path)
  return nil if taxon_name.nil? || target.nil?
  if target
    case target.to_sym
    when :taxon_name_path
      link_to(taxon_name_tag(taxon_name), taxon_name.metamorphosize)
    else
      link_to(taxon_name_tag(taxon_name), send(target, {taxon_name_id: taxon_name.id}))
    end
  end
end

#taxon_name_parent_tag(taxon_name, css_class = [:feedback, 'feedback-secondary', 'feedback-thin']) ⇒ Object 



43
44
45
46
 
# File 'app/helpers/taxon_names_helper.rb', line 43

def taxon_name_parent_tag(taxon_name, css_class = [:feedback, 'feedback-secondary', 'feedback-thin'] )
  return nil if taxon_name.nil? || taxon_name.parent_id.nil?
  content_tag(:span, taxon_name_tag(taxon_name.parent).html_safe, class: css_class)
end

#taxon_name_rank_select_tag(taxon_name: TaxonName.new, code: nil) ⇒ Object

TODO: Scope to code



253
254
255
 
# File 'app/helpers/taxon_names_helper.rb', line 253

def taxon_name_rank_select_tag(taxon_name: TaxonName.new, code:  nil)
  select(:taxon_name, :rank_class, options_for_select(RANKS_SELECT_OPTIONS, selected: taxon_name.rank_string) )
end

#taxon_name_rank_tag(taxon_name, css_class = [:feedback, 'feedback-info', 'feedback-thin']) ⇒ Object 



38
39
40
41
 
# File 'app/helpers/taxon_names_helper.rb', line 38

def taxon_name_rank_tag(taxon_name, css_class = [:feedback, 'feedback-info', 'feedback-thin'] )
  return nil if taxon_name.nil?
  content_tag(:span, taxon_name.rank || 'Combination', class: css_class)
end

#taxon_name_short_status(taxon_name) ⇒ Object 



121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
 
# File 'app/helpers/taxon_names_helper.rb', line 121

def taxon_name_short_status(taxon_name)
  if taxon_name.is_combination?
    n = taxon_name.finest_protonym
    s = ['This name is subsequent combination of']
    if n.is_valid?
      s += [
        link_to(original_taxon_name_tag(n), browse_nomenclature_task_path(taxon_name_id: n.id)),
        history_author_year_tag(n),
      ]
    else
      v = n.valid_taxon_name
      s += [
        original_taxon_name_tag(n),
        history_author_year_tag(n),
        'whose valid/accepted name is',
        link_to(taxon_name_tag(v), browse_nomenclature_task_path(taxon_name_id: v.id) ),
        v.cached_author_year
      ]
    end

    (s.join(' ') + '.').html_safe
  else
    if taxon_name.is_valid? # taxon_name.unavailable_or_invalid?
      content_tag(:span, 'This name is valid/accepted.', class: :brief_status, data: {icon: :ok, status: :valid })
    else
      if taxon_name.is_ambiguously_invalid?
        tag.span('This name is not valid/accepted.'.html_safe, class: :brief_status, data: {icon: :attention, status: :invalid})
      else
        tag.span("This name is not valid/accepted.<br>The valid name is #{taxon_name_browse_link(taxon_name.valid_taxon_name)}.".html_safe, class: :brief_status, data: {icon: :attention, status: :invalid})
      end
    end
  end
end

#taxon_name_short_status_label(taxon_name) ⇒ Object 



159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
 
# File 'app/helpers/taxon_names_helper.rb', line 159

def taxon_name_short_status_label(taxon_name)
  if taxon_name.is_combination?
    n = taxon_name.finest_protonym
    s = ['This name is subsequent combination of']
    if n.is_valid?
      s += [
        original_taxon_name_tag(n),
        history_author_year_tag(n),
      ]
    else
      v = n.valid_taxon_name
      s += [
        original_taxon_name_tag(n),
        history_author_year_tag(n),
        'whose valid/accepted name is',
        taxon_name_tag(v),
        v.cached_author_year
      ]
    end

    (s.join(' ') + '.')
  else
    if taxon_name.is_valid? # taxon_name.unavailable_or_invalid?
      'This name is valid/accepted.'
    else
      if taxon_name.is_ambiguously_invalid?
        'This name is not valid/accepted.'
      else
        "This name is not valid/accepted. The valid name is #{taxon_name.valid_taxon_name.cached}."
      end
    end
  end
end

#taxon_name_status_label(taxon_name) ⇒ Object 



155
156
157
 
# File 'app/helpers/taxon_names_helper.rb', line 155

def taxon_name_status_label(taxon_name)
  taxon_name.combined_statuses.collect{|s| s}.join('; ')
end

#taxon_name_tag(taxon_name) ⇒ String

Returns the taxon name without author year, with HTML.

Returns:

  • (String) —

    the taxon name without author year, with HTML



5
6
7
8
9
 
# File 'app/helpers/taxon_names_helper.rb', line 5

def taxon_name_tag(taxon_name)
  return nil if taxon_name.nil?
  return taxon_name.name if taxon_name.new_record?
  taxon_name.cached_html.try(:html_safe) || taxon_name.name
end

#taxon_name_type_short_tag(taxon_name) ⇒ Object 



112
113
114
115
116
117
118
119
 
# File 'app/helpers/taxon_names_helper.rb', line 112

def taxon_name_type_short_tag(taxon_name)
  return nil if taxon_name.nil?
  if taxon_name.is_valid?
    '&#10003;'.html_safe # checkmark
  else
    taxon_name.type == 'Combination' ? '[c]' : '&#10060;'.html_safe # c or X
  end
end

#taxon_name_year_data_table(data, *attributes) ⇒ Object 



433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
 
# File 'app/helpers/taxon_names_helper.rb', line 433

def taxon_name_year_data_table(data, *attributes)
  a = data[:data].first
  b = data[:data].second

  content_tag(:table,
              safe_join([
                tag.thead(
                  tag.tr(
                    safe_join [tag.th('Year'), tag.th(a[:name]), tag.th(b[:name])]
                  )
                ),
                safe_join((data[:metadata][:min_year]..data[:metadata][:max_year]).collect{|y|
                  tag.tr(
                    safe_join([
                      tag.td(y),
                      tag.td(a[:data][y]),
                      tag.td(b[:data][y])
                    ])
                  )
                })
              ]), *attributes
             )
end

#taxon_names_by_year_count(names) ⇒ Object 



516
517
518
519
 
# File 'app/helpers/taxon_names_helper.rb', line 516

def taxon_names_by_year_count(names)
  t = names.select('EXTRACT(YEAR FROM taxon_names.cached_nomenclature_date) AS year, COUNT(*) AS count').group('year').inject({}){|hsh, r| hsh[r.year.to_i] = r.count; hsh}
  t
end

#taxon_names_count_by_validity_and_year(scope = nil) ⇒ Object

Perhaps a /lib/catalog method

Returns:

  • Hash



402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
 
# File 'app/helpers/taxon_names_helper.rb', line 402

def taxon_names_count_by_validity_and_year(scope = nil)
  return {} if scope.nil?
  invalid = taxon_names_by_year_count(scope.that_is_invalid)
  valid = taxon_names_by_year_count(scope.that_is_valid)

  min = [invalid.keys.sort.first, invalid.keys.sort.first].compact.sort.first || 0
  max = [valid.keys.sort.last, valid.keys.sort.last].compact.sort.first || 0

  min = 1759 if min < 1759
  max = Time.current.year if max > Time.current.year

  invalid_data = {}
  valid_data = {}

  (min..max).each do |y|
    invalid_data[y] = invalid[y].present? ? invalid[y].to_i : 0
    valid_data[y] = valid[y].present? ? valid[y].to_i : 0
  end

  return {
    metadata: {
      max_year: max,
      min_year: min,
    },
    data: [
      { name: 'Valid', data: valid_data},
      { name: 'Invalid', data: invalid_data}
    ]
  }
end

#taxon_names_cumulative_count_by_validity_and_year(scope = nil) ⇒ Object

Perhaps a /lib/catalog method

Returns:

  • Hash



459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
 
# File 'app/helpers/taxon_names_helper.rb', line 459

def taxon_names_cumulative_count_by_validity_and_year(scope = nil)
  return {} if scope.nil?
  invalid = taxon_names_by_year_count(scope.that_is_invalid)
  valid = taxon_names_by_year_count(scope.that_is_valid)

  min = [invalid.keys.sort.first, invalid.keys.sort.first].compact.sort.first || 0
  max = [valid.keys.sort.last, valid.keys.sort.last].compact.sort.first || 0

  min = 1759 if min < 1759
  max = Time.current.year if max > Time.current.year

  invalid_data = {}
  valid_data = {}

  invalid_total = 0
  valid_total = 0

  (min..max).each do |y|

    i = ( invalid[y].present? ? invalid[y].to_i : 0 )
    v = ( valid[y].present? ? valid[y].to_i : 0  )

    invalid_total += i
    valid_total += v

    invalid_data[y] = invalid_total
    valid_data[y] =  valid_total
  end

  return {
    metadata: {
      max_year: max,
      min_year: min,
    },
    data: [
      { name: 'Valid', data: valid_data},
      { name: 'Invalid', data: invalid_data}
    ]
  }
end

#taxon_names_per_year(totals) ⇒ Object 



500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
 
# File 'app/helpers/taxon_names_helper.rb', line 500

def taxon_names_per_year(totals)
  min = totals.keys.sort.first || 0
  max = totals.keys.sort.last || 0

  min = 1759 if min < 1759
  max = Time.current.year if max > Time.current.year

  data = {}

  (min..max).each do |y|
    data[y] = totals[y].present? ? totals[y].to_i : 0
  end

  data
end

#taxon_names_search_form ⇒ Object 



257
258
259
 
# File 'app/helpers/taxon_names_helper.rb', line 257

def taxon_names_search_form
  render '/taxon_names/quick_search_form'
end