Class: TaxonNameRelationship::Iczn::Invalidating::Synonym::Objective

Inherits:
TaxonNameRelationship::Iczn::Invalidating::Synonym show all
Defined in:
app/models/taxon_name_relationship/iczn/invalidating/synonym/objective.rb

Defined Under Namespace

Classes: ReplacedHomonym, SynonymicHomonym, UnjustifiedEmendation, UnnecessaryReplacementName

Constant Summary collapse

NOMEN_URI = 
'http://purl.obolibrary.org/obo/NOMEN_0000277'.freeze

Constants included from SoftValidation

SoftValidation::ANCESTORS_WITH_SOFT_VALIDATIONS

Instance Attribute Summary

Attributes inherited from TaxonNameRelationship

#no_cached, #object_taxon_name_id, #project_id, #subject_taxon_name_id, #type

Class Method Summary collapse

Instance Method Summary collapse

Methods inherited from TaxonNameRelationship::Iczn::Invalidating::Synonym

disjoint_object_classes, #object_status_connector_to_subject, #subject_status_connector_to_object, #sv_fix_not_specific_relationship, #sv_synonym_relationship

Methods inherited from TaxonNameRelationship::Iczn::Invalidating

assignable, disjoint_object_classes, disjoint_subject_classes, gbif_status_of_subject, nomenclatural_priority, #object_status_connector_to_subject, #similar_homonym_string, #subject_properties, #subject_status_connector_to_object, #sv_synonym_relationship

Methods inherited from TaxonNameRelationship::Iczn

disjoint_object_classes, disjoint_subject_classes, #sv_validate_priority, valid_object_ranks, valid_subject_ranks

Methods inherited from TaxonNameRelationship

assignable, collect_descendants_and_itself_to_s, collect_descendants_to_s, collect_to_s, disjoint_object_classes, disjoint_subject_classes, #dwc_occurrences, gbif_status_of_object, gbif_status_of_subject, #is_combination?, #is_invalidating?, nomen_uri, nomenclatural_priority, #nomenclature_date, #object_properties, #object_status_connector_to_subject, #object_status_tag, parent, required_taxon_name_relationships, #set_cached_names_for_taxon_names, #subject_and_object_in_same_project, #subject_invalid_statuses, #subject_properties, #subject_status_connector_to_object, #subject_status_tag, #sv_coordinated_taxa, #sv_coordinated_taxa_object, #sv_fix_combination_relationship, #sv_fix_coordinated_object_taxa, #sv_fix_coordinated_subject_taxa, #sv_fix_not_specific_relationship, #sv_fix_subject_parent_update, #sv_specific_relationship, #sv_synonym_linked_to_valid_name, #sv_synonym_relationship, #sv_validate_disjoint_object, #sv_validate_disjoint_relationships, #sv_validate_disjoint_subject, #sv_validate_priority, #sv_validate_required_relationships, #sv_validate_seniority, #type_class, #type_class=, #type_name, valid_object_ranks, valid_subject_ranks, #validate_object_and_subject_both_protonyms, #validate_object_must_equal_subject_for_uncertain_placement, #validate_rank_group, #validate_subject_and_object_are_not_identical, #validate_subject_and_object_ranks, #validate_subject_and_object_share_code, #validate_type, #validate_uniqueness_of_typification_object

Methods included from Shared::IsData

#errors_excepting, #full_error_messages_excepting, #identical, #is_community?, #is_destroyable?, #is_editable?, #is_in_use?, #is_in_users_projects?, #metamorphosize, #similar

Methods included from SoftValidation

#clear_soft_validations, #fix_for, #fix_soft_validations, #soft_fixed?, #soft_valid?, #soft_validate, #soft_validated?, #soft_validations, #soft_validators

Methods included from Shared::Notes

#concatenated_notes_string, #reject_notes

Methods included from Shared::Citations

#cited?, #mark_citations_for_destruction, #nomenclature_date, #origin_citation_source_id, #reject_citations, #requires_citation?, #sources_by_topic_id

Methods included from Housekeeping

#has_polymorphic_relationship?

Methods inherited from ApplicationRecord

transaction_with_retry

Class Method Details

.assignment_method ⇒ Object 



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# File 'app/models/taxon_name_relationship/iczn/invalidating/synonym/objective.rb', line 19

def self.assignment_method
  # bus.set_as_iczn_objective_synonym_of(aus)
  :iczn_set_as_objective_synonym_of
end

.disjoint_taxon_name_relationships ⇒ Object 



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# File 'app/models/taxon_name_relationship/iczn/invalidating/synonym/objective.rb', line 5

def self.disjoint_taxon_name_relationships
  self.parent.disjoint_taxon_name_relationships +
      self.collect_descendants_and_itself_to_s(TaxonNameRelationship::Iczn::Invalidating::Synonym::Suppression) +
      self.collect_to_s(TaxonNameRelationship::Iczn::Invalidating::Synonym)
end

.inverse_assignment_method ⇒ Object

as.



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# File 'app/models/taxon_name_relationship/iczn/invalidating/synonym/objective.rb', line 25

def self.inverse_assignment_method
  # aus.iczn_objective_synonym = bus
  :iczn_objective_synonym
end

Instance Method Details

#object_status ⇒ Object 



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# File 'app/models/taxon_name_relationship/iczn/invalidating/synonym/objective.rb', line 11

def object_status
  'senior objective synonym'
end

#subject_status ⇒ Object 



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# File 'app/models/taxon_name_relationship/iczn/invalidating/synonym/objective.rb', line 15

def subject_status
  'objective synonym'
end

#sv_fix_objective_synonym_relationship ⇒ Object 



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# File 'app/models/taxon_name_relationship/iczn/invalidating/synonym/objective.rb', line 38

def sv_fix_objective_synonym_relationship
  fixed = false
  s = self.subject_taxon_name
  o = self.object_taxon_name
  if s.get_primary_type.empty?
    t2 = s
    t1 = o
  elsif o.get_primary_type.empty?
    t2 = o
    t1 = s
  else
    return false
  end
  types2 = t1.get_primary_type
  tnr2 = t1.type_taxon_name_relationship
  unless types2.empty?
    new_type_material = []
    types2.each do |t|
      new_type_material.push({type_type: t.type_type, protonym_id: t2.id, collection_object_id: t.collection_object_id, source: t.source})
    end
    t2.type_materials.build(new_type_material)
    fixed = true
  end

  unless tnr2.nil?
    tnr = t2.related_taxon_name_relationships.build(type: tnr2.type, subject_taxon_name_id: tnr2.subject_taxon_name_id)
    c2 = tnr2.citations.where(is_original: true).first
    tnr.citations.build(source_id: c2.source_id, pages: c2.pages) unless c2.nil?
    fixed = true
  end

  if fixed
    begin
      Protonym.transaction do
        t2.save
      end
      return true
    rescue
      return false
    end
  end
end

#sv_not_specific_relationship ⇒ Object 



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# File 'app/models/taxon_name_relationship/iczn/invalidating/synonym/objective.rb', line 81

def sv_not_specific_relationship
  true
end

#sv_objective_synonym_relationship ⇒ Object 



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# File 'app/models/taxon_name_relationship/iczn/invalidating/synonym/objective.rb', line 30

def sv_objective_synonym_relationship
  s = self.subject_taxon_name
  o = self.object_taxon_name
  if (s.type_taxon_name != o.type_taxon_name ) || !s.has_same_primary_type(o)
    soft_validations.add(:type, "Objective synonyms #{s.cached_html} and #{o.cached_html} should have the same type")
  end
end