Class: TaxonNameRelationship::Iczn::Invalidating::Synonym::Objective::UnjustifiedEmendation

Inherits:
TaxonNameRelationship::Iczn::Invalidating::Synonym::Objective show all
Defined in:
app/models/taxon_name_relationship/iczn/invalidating/synonym/objective/unjustified_emendation.rb

Constant Summary collapse

NOMEN_URI = 
'http://purl.obolibrary.org/obo/NOMEN_0000278'.freeze

Constants included from SoftValidation

SoftValidation::ANCESTORS_WITH_SOFT_VALIDATIONS

Instance Attribute Summary

Attributes inherited from TaxonNameRelationship

#no_cached, #object_taxon_name_id, #project_id, #subject_taxon_name_id, #type

Class Method Summary collapse

Instance Method Summary collapse

Methods inherited from TaxonNameRelationship::Iczn::Invalidating::Synonym::Objective

#sv_fix_objective_synonym_relationship, #sv_not_specific_relationship, #sv_objective_synonym_relationship

Methods inherited from TaxonNameRelationship::Iczn::Invalidating::Synonym

disjoint_object_classes, #object_status_connector_to_subject, #sv_fix_not_specific_relationship, #sv_not_specific_relationship, #sv_synonym_relationship

Methods inherited from TaxonNameRelationship::Iczn::Invalidating

assignable, disjoint_object_classes, disjoint_subject_classes, gbif_status_of_subject, nomenclatural_priority, #object_status_connector_to_subject, #similar_homonym_string, #subject_properties, #sv_fix_not_specific_relationship, #sv_not_specific_relationship, #sv_synonym_relationship

Methods inherited from TaxonNameRelationship::Iczn

disjoint_object_classes, disjoint_subject_classes, #sv_validate_priority, valid_object_ranks, valid_subject_ranks

Methods inherited from TaxonNameRelationship

assignable, collect_descendants_and_itself_to_s, collect_descendants_to_s, collect_to_s, disjoint_object_classes, disjoint_subject_classes, #dwc_occurrences, gbif_status_of_object, gbif_status_of_subject, #is_combination?, #is_invalidating?, nomen_uri, nomenclatural_priority, #nomenclature_date, #object_properties, #object_status_connector_to_subject, #object_status_tag, parent, required_taxon_name_relationships, #set_cached_names_for_taxon_names, #subject_and_object_in_same_project, #subject_invalid_statuses, #subject_properties, #subject_status_tag, #sv_coordinated_taxa, #sv_coordinated_taxa_object, #sv_fix_combination_relationship, #sv_fix_coordinated_object_taxa, #sv_fix_coordinated_subject_taxa, #sv_fix_not_specific_relationship, #sv_fix_objective_synonym_relationship, #sv_fix_subject_parent_update, #sv_not_specific_relationship, #sv_objective_synonym_relationship, #sv_synonym_linked_to_valid_name, #sv_synonym_relationship, #sv_validate_disjoint_object, #sv_validate_disjoint_relationships, #sv_validate_disjoint_subject, #sv_validate_priority, #sv_validate_required_relationships, #sv_validate_seniority, #type_class, #type_class=, #type_name, valid_object_ranks, valid_subject_ranks, #validate_object_and_subject_both_protonyms, #validate_object_must_equal_subject_for_uncertain_placement, #validate_rank_group, #validate_subject_and_object_are_not_identical, #validate_subject_and_object_ranks, #validate_subject_and_object_share_code, #validate_type, #validate_uniqueness_of_typification_object

Methods included from Shared::IsData

#errors_excepting, #full_error_messages_excepting, #identical, #is_community?, #is_in_use?, #similar

Methods included from SoftValidation

#clear_soft_validations, #fix_for, #fix_soft_validations, #soft_fixed?, #soft_valid?, #soft_validate, #soft_validated?, #soft_validations, #soft_validators

Methods included from Shared::Notes

#concatenated_notes_string, #reject_notes

Methods included from Shared::Citations

#cited?, #mark_citations_for_destruction, #nomenclature_date, #origin_citation_source_id, #reject_citations, #requires_citation?, #sources_by_topic_id

Methods included from Housekeeping

#has_polymorphic_relationship?

Methods inherited from ApplicationRecord

transaction_with_retry

Class Method Details

.assignment_method ⇒ Object 



33
34
35
36
 
# File 'app/models/taxon_name_relationship/iczn/invalidating/synonym/objective/unjustified_emendation.rb', line 33

def self.assignment_method
  # bus.set_as_iczn_unjustified_emendation_of(aus)
  :iczn_set_as_unjustified_emendation_of
end

.disjoint_taxon_name_relationships ⇒ Object 



13
14
15
16
17
18
19
 
# File 'app/models/taxon_name_relationship/iczn/invalidating/synonym/objective/unjustified_emendation.rb', line 13

def self.disjoint_taxon_name_relationships
  self.parent.disjoint_taxon_name_relationships +
      self.collect_to_s(TaxonNameRelationship::Iczn::Invalidating::Synonym::Objective,
          TaxonNameRelationship::Iczn::Invalidating::Synonym::Objective::SynonymicHomonym,
          TaxonNameRelationship::Iczn::Invalidating::Synonym::Objective::UnnecessaryReplacementName,
          TaxonNameRelationship::Iczn::Invalidating::Synonym::Objective::ReplacedHomonym)
end

.inverse_assignment_method ⇒ Object 



38
39
40
41
 
# File 'app/models/taxon_name_relationship/iczn/invalidating/synonym/objective/unjustified_emendation.rb', line 38

def self.inverse_assignment_method
  # aus.iczn_unjustified_emendation = bus
  :iczn_unjustified_emendation
end

Instance Method Details

#object_status ⇒ Object 



21
22
23
 
# File 'app/models/taxon_name_relationship/iczn/invalidating/synonym/objective/unjustified_emendation.rb', line 21

def object_status
  'correct original spelling'
end

#subject_status ⇒ Object 



25
26
27
 
# File 'app/models/taxon_name_relationship/iczn/invalidating/synonym/objective/unjustified_emendation.rb', line 25

def subject_status
  'unjustified emendation'
end

#subject_status_connector_to_object ⇒ Object 



29
30
31
 
# File 'app/models/taxon_name_relationship/iczn/invalidating/synonym/objective/unjustified_emendation.rb', line 29

def subject_status_connector_to_object
  ' for'
end

#sv_different_original_genera ⇒ Object (protected) 



53
54
55
56
57
58
59
 
# File 'app/models/taxon_name_relationship/iczn/invalidating/synonym/objective/unjustified_emendation.rb', line 53

def sv_different_original_genera
  s = self.subject_taxon_name
  o = self.object_taxon_name
  if o.is_species_rank? && o.original_genus && s.original_genus != o.original_genus
    soft_validations.add(:type, "Unjustified emendation and correctly spelled names should have the same original genus: '#{o.original_genus.cached_html}'", success_message: 'Original genus was updated', failure_message:  'Failed to update original genus')
  end
end

#sv_fix_different_original_genera ⇒ Object (protected) 



60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
 
# File 'app/models/taxon_name_relationship/iczn/invalidating/synonym/objective/unjustified_emendation.rb', line 60

def sv_fix_different_original_genera
  s = self.subject_taxon_name
  o = self.object_taxon_name
  if o.is_species_rank? && s.original_genus.nil? && o.original_genus
    begin
      Protonym.transaction do
        s.original_genus = o.original_genus
        s.original_species = s if s.original_species.nil?
        s.save
      end
      return true
    rescue
      return false
    end
  else
    return false
  end
end

#sv_specific_relationship ⇒ Object (protected) 



45
46
47
48
49
50
51
 
# File 'app/models/taxon_name_relationship/iczn/invalidating/synonym/objective/unjustified_emendation.rb', line 45

def sv_specific_relationship
  s = self.subject_taxon_name
  o = self.object_taxon_name
  if s.name == o.name
    soft_validations.add(:base, "Unjustified emendation and correctly spelled names are identical: '#{s.cached_html}'")
  end
end